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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F091556 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 49 residues |
| Representative Sequence | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNWWSR |
| Number of Associated Samples | 84 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 71.96 % |
| % of genes near scaffold ends (potentially truncated) | 24.30 % |
| % of genes from short scaffolds (< 2000 bps) | 87.85 % |
| Associated GOLD sequencing projects | 82 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.60 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (70.093 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.019 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.103 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (32.710 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.72% β-sheet: 0.00% Coil/Unstructured: 51.28% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.60 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF00033 | Cytochrome_B | 29.91 |
| PF13631 | Cytochrom_B_N_2 | 4.67 |
| PF00535 | Glycos_transf_2 | 3.74 |
| PF00032 | Cytochrom_B_C | 3.74 |
| PF02397 | Bac_transf | 0.93 |
| PF00011 | HSP20 | 0.93 |
| PF00196 | GerE | 0.93 |
| PF01808 | AICARFT_IMPCHas | 0.93 |
| PF02142 | MGS | 0.93 |
| PF01313 | Bac_export_3 | 0.93 |
| PF14602 | Hexapep_2 | 0.93 |
| PF14358 | DUF4405 | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG1290 | Cytochrome b subunit of the bc complex | Energy production and conversion [C] | 33.64 |
| COG0071 | Small heat shock protein IbpA, HSP20 family | Posttranslational modification, protein turnover, chaperones [O] | 0.93 |
| COG0138 | AICAR transformylase/IMP cyclohydrolase PurH | Nucleotide transport and metabolism [F] | 0.93 |
| COG2148 | Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid) | Cell wall/membrane/envelope biogenesis [M] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 70.09 % |
| All Organisms | root | All Organisms | 29.91 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 14.02% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 11.21% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 7.48% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 4.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.74% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 3.74% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 3.74% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 2.80% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.80% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.80% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.80% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 2.80% |
| Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 1.87% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.87% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.87% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 1.87% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 1.87% |
| Wastewater | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater | 1.87% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.93% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment | 0.93% |
| Groundwater | Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater | 0.93% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.93% |
| Salt Marsh Sediment | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment | 0.93% |
| Seawater | Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater | 0.93% |
| Hot Spring Fe-Si Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment | 0.93% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.93% |
| Compost | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil | 0.93% |
| Sugarcane Root And Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil | 0.93% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.93% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.93% |
| Switchgrass, Maize And Mischanthus Litter | Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2067725003 | Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil | Environmental | Open in IMG/M |
| 2170459016 | Litter degradation ZMR2 | Engineered | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300002120 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 | Environmental | Open in IMG/M |
| 3300002123 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3 | Environmental | Open in IMG/M |
| 3300002124 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3 | Environmental | Open in IMG/M |
| 3300002407 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 | Environmental | Open in IMG/M |
| 3300002485 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 | Environmental | Open in IMG/M |
| 3300002530 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3 | Environmental | Open in IMG/M |
| 3300003321 | Sugarcane bulk soil Sample H1 | Environmental | Open in IMG/M |
| 3300004065 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2 | Environmental | Open in IMG/M |
| 3300004145 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 | Environmental | Open in IMG/M |
| 3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006047 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 | Environmental | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009095 | Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015 | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009873 | Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant | Engineered | Open in IMG/M |
| 3300010038 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106 | Environmental | Open in IMG/M |
| 3300010045 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 | Environmental | Open in IMG/M |
| 3300010391 | Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010938 | Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117 | Environmental | Open in IMG/M |
| 3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300013772 | Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M | Environmental | Open in IMG/M |
| 3300014254 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 | Environmental | Open in IMG/M |
| 3300014265 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 | Environmental | Open in IMG/M |
| 3300014270 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 | Environmental | Open in IMG/M |
| 3300014310 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1 | Environmental | Open in IMG/M |
| 3300014311 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300017540 | Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig OP (version 2) | Environmental | Open in IMG/M |
| 3300017565 | Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft BY (version 2) | Environmental | Open in IMG/M |
| 3300018056 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 | Environmental | Open in IMG/M |
| 3300018059 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex | Environmental | Open in IMG/M |
| 3300018063 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2 | Environmental | Open in IMG/M |
| 3300018064 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300020068 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022209 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13 | Environmental | Open in IMG/M |
| 3300022413 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21 | Environmental | Open in IMG/M |
| 3300025001 | Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300025119 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025159 | Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3 | Environmental | Open in IMG/M |
| 3300025165 | Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1 | Environmental | Open in IMG/M |
| 3300025289 | Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2 | Environmental | Open in IMG/M |
| 3300025324 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025959 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027815 | Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes) | Environmental | Open in IMG/M |
| 3300027872 (restricted) | Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9 | Environmental | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027915 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300028812 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48 | Environmental | Open in IMG/M |
| 3300030606 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 | Environmental | Open in IMG/M |
| 3300031091 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031093 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031652 | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40 | Environmental | Open in IMG/M |
| 3300031801 | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 | Environmental | Open in IMG/M |
| 3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300033417 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| GPWSG_03338340 | 2067725003 | Soil | HPDDVFGRLISVDAAELVIVFGTIAISMVFMVAFGNWWSR |
| 2ZMR_03284180 | 2170459016 | Switchgrass, Maize And Mischanthus Litter | QMNLTELFVGFHPDEVFNSKISVDAAELLLVFGTIAISMVLMVIFGNWWSR |
| JGI10216J12902_1208291232 | 3300000956 | Soil | MDIAVLFIGFHPDDVFGRLISIDAAELVIVFGTIAISLGFMVAFGNWWSR* |
| C687J26616_101315931 | 3300002120 | Soil | MDLVGLFIGFHPDEVFGGQVSVDIAELLIVFGTIALSLVAMVIFGNWWSR* |
| C687J26634_101551231 | 3300002123 | Soil | MDLVGLFIGFHPDEVFGGQVSVDIAELLIVFGTIAVSLGIMVVFGNWWSR* |
| C687J26631_100617943 | 3300002124 | Soil | MFIGFHPDDVFGRLVSVDMAELLVVFGTIAISMGVMVAFGNWWSR* |
| C687J26631_100795422 | 3300002124 | Soil | MDLVGLFIGFHPDEVFGGQVSVDIAELLIVFGTIALSLGAMVIFGNWWSR* |
| C687J26631_103193562 | 3300002124 | Soil | MDLLGLFIGFHPDEVFGSKVSVDMAELLVVFGTIAISLGIMVVLGNWWSR* |
| C687J29651_101393532 | 3300002407 | Soil | LFIGFHPDEVFGGQVSVDIAELLIVFGTIAVSLGIMVVFGNWWSR* |
| C687J35088_101987121 | 3300002485 | Soil | PDEVFGGQVSVDIAELLIVFGTIAVSLGIMVVFGNWWSR* |
| C687J35503_100139621 | 3300002530 | Soil | MDLVGLFIGFHPDEVFGGXVSVDIAELLIVFGTIALSLXAMVIFGNWWSR* |
| soilH1_103902511 | 3300003321 | Sugarcane Root And Bulk Soil | MELTSLFIGFHPDDVFGRAVSVDLAELIVVFGAIAFTVGMMVILGNWWSR* |
| Ga0055481_102293811 | 3300004065 | Natural And Restored Wetlands | MDLFSLFIGFHPDDVFGRAISVDASELVIVFGTIAISMVIMVWFGNWWSR* |
| Ga0055489_100129132 | 3300004145 | Natural And Restored Wetlands | MDLFGLFIGFHPDDVFGQAVSVDMAELLIVFGTIAASMVAMVAFGNWWSR* |
| Ga0062590_1011468692 | 3300004157 | Soil | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVVFGNWWSR* |
| Ga0063356_1028094631 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MGLWEQLFIGFHPDDVFNRWVSVDMAELIIVFGAIAISLGIMVIFGNWWSR* |
| Ga0063356_1045201032 | 3300004463 | Arabidopsis Thaliana Rhizosphere | SVTGLELLSQLFIGFHPDDVFFRKVSVDMAELLIVFGTIALTMGVLVAFGNWWSR* |
| Ga0063356_1046946192 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MELVSLFIGWHPDDVFLRQVSVDMAELILVFGTIAISLAIMVVFGNWWSR* |
| Ga0063356_1053782362 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MELTSLFIGWHPDDVFLRQISVDMAELVLVFGTIAISLAIMVVFGNWWSR* |
| Ga0062594_1025388451 | 3300005093 | Soil | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNW |
| Ga0070690_1015208102 | 3300005330 | Switchgrass Rhizosphere | FIGFHPDDVFGRLISVDASELVIVFGTIAISMAFMVAFGNWWSR* |
| Ga0070709_117966712 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLTELFVGFHPDEVFNSKISVDAAELLLVFGTIAISMVLMVIFGNWWSR* |
| Ga0066687_107763061 | 3300005454 | Soil | MDIATLFVGFHPDDVFFRLISVDASELLIVFGTIAISMVFMVAFGNWWSR* |
| Ga0070685_108779641 | 3300005466 | Switchgrass Rhizosphere | MDIATLFIGFHPDDVFGRLISVDASELVIVFGTIAISMAFMVAFGNWWSR* |
| Ga0070684_1012173712 | 3300005535 | Corn Rhizosphere | MDIVSLFVGFHPDEVFNSKISVDFAELVIVFGTIAISMALMVVFGNWWSR* |
| Ga0068857_1012018232 | 3300005577 | Corn Rhizosphere | MDIVSLFVGFHPDEVFNSKISVDAAELLLVFGTIAISMVLMVIFGNWWSR* |
| Ga0066903_1043499072 | 3300005764 | Tropical Forest Soil | MDLVSLFIGFHPDEVFDSKISVDAAELVIVFGTIAISMALMVVFGNWWSR* |
| Ga0075024_1002123602 | 3300006047 | Watersheds | MDIAALFIGFHPDDVFGRLISVDASELVIVFGTIAISMAFMVAFGNWWSR* |
| Ga0075428_1005891502 | 3300006844 | Populus Rhizosphere | LGQLFIGFHPDDVFFRLVSVDMAELLIVFGFITITMVVMVVIGDWWSR* |
| Ga0075430_1010105982 | 3300006846 | Populus Rhizosphere | MELLSLFIGFHPDDVFFRLVSVDMAELIIVFGTIAVSLGAMVWFGNWWSR* |
| Ga0111539_110888992 | 3300009094 | Populus Rhizosphere | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNWWSR* |
| Ga0111539_118817362 | 3300009094 | Populus Rhizosphere | MELTSLFIGWHPDDDFLRQVSVDMAELVLVFGTLAISLAIMVVFGNWWSR* |
| Ga0079224_1035314072 | 3300009095 | Agricultural Soil | MDFSVLFSGFHPDDVFGRSVSVDGAELILVFGLLAGGLGIMVMLGNWWSR* |
| Ga0114129_118961301 | 3300009147 | Populus Rhizosphere | MELLAQLFIGFHPDDVFGRLVSVDFAELLIVFGTIALSLGFMVAFGNWWSR* |
| Ga0111538_114041012 | 3300009156 | Populus Rhizosphere | MGLWEQLFIGFHPDDVFNRWVSVDMAELIIVFGAIAISLGIMVAFGNWWSR* |
| Ga0111538_119326081 | 3300009156 | Populus Rhizosphere | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMVFMVAFGNWWSR* |
| Ga0131077_102350152 | 3300009873 | Wastewater | MELVSLFIGWHPDDVFLRQVSVDMAELILVFGTIALSLAVMVVFGNWWSR* |
| Ga0131077_109325882 | 3300009873 | Wastewater | MELTSLFIGWHPDDVFLRQVSVDMAELILVFGTIALSLAVMVVFGNWWSR* |
| Ga0126315_110238852 | 3300010038 | Serpentine Soil | MDIFSLFIGWHPDDVLLRQVSVDMAELVIVFGTIALTLAIMVVFGNWWSR* |
| Ga0126311_104814872 | 3300010045 | Serpentine Soil | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMAFMVVFGNWWSR* |
| Ga0136847_115162502 | 3300010391 | Freshwater Sediment | VLFAGFEPDEIFNNLVSVDMAELLVVFGTIALSLGLMVVFGNWWSR* |
| Ga0134121_107948702 | 3300010401 | Terrestrial Soil | MDIATLFIGFHPDDVFGRLISVDASELLIVFGTIAISTAFMVAFGNWWSR* |
| Ga0137716_1000144865 | 3300010938 | Hot Spring Fe-Si Sediment | LSIASVLFAGFEPNEIFGKVFSVDMSELIIVFGTIAISIGILVAFGNWWSR* |
| Ga0137374_101726313 | 3300012204 | Vadose Zone Soil | MDLVGLFIGFHPDDIFGAKISVDIAELLVVLGTILISLGIMVAFGNWWSR* |
| Ga0150985_1070300332 | 3300012212 | Avena Fatua Rhizosphere | ALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMVFMVAFGNWWSR* |
| Ga0150985_1079117732 | 3300012212 | Avena Fatua Rhizosphere | MEQLALLFMGFHPDDVFFDQISVDAAELLLVFGTIAISMTILVIFGNWWSR* |
| Ga0150985_1105060231 | 3300012212 | Avena Fatua Rhizosphere | HKVSITKDATEGGRRTMDYSSLFVGFHPDDVFHRLVSVDAAELLIVFGTIAISMVFMVAFGNWWSR* |
| Ga0150985_1114980252 | 3300012212 | Avena Fatua Rhizosphere | MDIAALFIGFHPDEVFGSYISVDAAELVIVFGTIAISLGFMVAFGNWWSR* |
| Ga0137369_105531541 | 3300012355 | Vadose Zone Soil | MDLISLFIGFHPDDIFGAKISVDIAELLVVLGTILISLGIMVAFGNWWSR* |
| Ga0150984_1047890902 | 3300012469 | Avena Fatua Rhizosphere | GFHPDDVFGRLISVDAAELVIVFGTIAISMVFMVAFGNWWSR* |
| Ga0150984_1051172754 | 3300012469 | Avena Fatua Rhizosphere | GDRRKMDIVSLFVGFHPDEVFFSKISVDAAELVIVFGTIAISLAIMVVFGNWWSR* |
| Ga0150984_1157053583 | 3300012469 | Avena Fatua Rhizosphere | GFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNWWSR* |
| Ga0164298_106043622 | 3300012955 | Soil | DIAALFIGFIPDEVFGSLISVDAAELVIVFGTIAISLGFMVAFGNWWSR* |
| Ga0120158_104106482 | 3300013772 | Permafrost | MFVGFHPDEVFFSKISVDAAELLIVFGTIAISLAFMVAFGNWWSR* |
| Ga0075312_10657322 | 3300014254 | Natural And Restored Wetlands | LGQLFIGFHPDDVFFRLVSVDMAELMIVFGFIVITMGVMVAFGNWWSR* |
| Ga0075314_10891172 | 3300014265 | Natural And Restored Wetlands | MDLITLFIGFHPDDVFNRWISVDAAELVLVFGTLTISMGIMVWFGNWWSR* |
| Ga0075325_11563781 | 3300014270 | Natural And Restored Wetlands | LFSLFIGFHPDEVFGEAISVDAAELVLVFGTIAASLGIMVWFGNWWSR* |
| Ga0075331_11467751 | 3300014310 | Natural And Restored Wetlands | MEQLFIGFHPDDVFFRLVSVDMAELIIVFGAIAISLGAMVAFGNWWSR* |
| Ga0075322_11515651 | 3300014311 | Natural And Restored Wetlands | MDLYLLFNGFHPDDVFGRAISVDGAELVLVFGTIAISLVIMVWFGNWWSR* |
| Ga0132257_1013649971 | 3300015373 | Arabidopsis Rhizosphere | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMAFMVAFGNWWSR* |
| Ga0180217_10416762 | 3300017540 | Compost | MELFSLFIGWHPDDVFLRQVSVDMAELIIVFSTIAATLGVMVVFGNWWSR |
| Ga0182745_11525522 | 3300017565 | Soil | MELISLFIGWHPDDVFLRQVSVEMAELIIVFGTIAATLGVLVVFGNWWSR |
| Ga0184623_100335024 | 3300018056 | Groundwater Sediment | MELLSALFIGFHPDDVFGQLVSVDFAELLVVFGTIAISLGAMVAFGNWWSR |
| Ga0184615_104276202 | 3300018059 | Groundwater Sediment | MFIGFHPDDVFGRLVSVDMAELLVVFGTIAISMGVMVAFGNWWSR |
| Ga0184637_106818832 | 3300018063 | Groundwater Sediment | ATLGQLFIGFHPDDVFLRQVSVDMAELLVVFGFLAITMGIMVAFGNWWSR |
| Ga0187773_105227821 | 3300018064 | Tropical Peatland | MDLVSLFVGFHPDEVFNSKISVDAAELVLVFGTIAISMALMVAFGNWWSR |
| Ga0187773_111327371 | 3300018064 | Tropical Peatland | MDLVGLFIGFHPDDVFGNKVSVDFAEFIIVFGTIAISLAIMVVIGNWWSR |
| Ga0190272_108901363 | 3300018429 | Soil | MELFSLFIGWHPDDVFLRQVSVDMAELLIVFGTIALSLGVMVAFGNWWSR |
| Ga0190272_128586481 | 3300018429 | Soil | RKVCQAGGAAHQMDLLGLLFIGWHPDDVFNRLVSVDMAELLIVFGTIAISLGAMVAFGNWWSR |
| Ga0190275_117589201 | 3300018432 | Soil | MDLLATAIMFIGFHPDDVFDRKVSVDMAELIIVFGTIAISLGFMVWFGKWWSR |
| Ga0190274_116057412 | 3300018476 | Soil | LMELTSLFIGWHPDDVFLRQVSVDMAELIIVFGTIALSLAVMVVFGNWWSR |
| Ga0184649_10337801 | 3300020068 | Groundwater Sediment | ARTSGEMDLTNLFIGFHPDDVFGRVVSVDMAELLVVFGAIAISLGIMVAFGNWWSR |
| Ga0224497_104223392 | 3300022209 | Sediment | LFIGFHPDDVFGRAVSVDGAELILVFSLLAGGLGIMVWFGNWWSR |
| Ga0224508_100934282 | 3300022413 | Sediment | MELIGLFIGFHPDEVFGSTVSVDMAELMIVFGTIALSMVAMVAFGNWWSR |
| Ga0209618_10285872 | 3300025001 | Soil | MDLVGLFIGFHPDEVFGGQVSVDIAELLIVFGTIALSLVAMVIFGNWWSR |
| Ga0209126_11022142 | 3300025119 | Soil | EVFGGQVSVDIAELLIVFGTIALSLVAMVIFGNWWSR |
| Ga0209619_100471662 | 3300025159 | Soil | MDLVGLFIGFHPDEVFGGQVSVDIAELLIVFGTIAVSLGIMVVFGNWWSR |
| Ga0209108_100438053 | 3300025165 | Soil | LEVLSVLFAGFEPNKIFFEQVSVDMAELIIVFGTVAISLGLLVVFGNWWSR |
| Ga0209002_100098697 | 3300025289 | Soil | PDEVFGGQVSVDIAELLIVFGTIALSLVAMVIFGNWWSR |
| Ga0209640_101415772 | 3300025324 | Soil | LEVLSVLFSGFEPNKIFFEQLSVDMAELIIVFGTVAISLGLLVVFGNWWSR |
| Ga0209640_104545622 | 3300025324 | Soil | MNLLGLFIGFHPDDIFGRTVSVDMAELLVVFGAIAITMVVMVAFGNWWSR |
| Ga0209640_105106932 | 3300025324 | Soil | MDLTNLFIGFHPDDVFGRVISVDMAELLVVFGAIAISLAVMVAFGNWWSR |
| Ga0207693_105868532 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLTELFVGFHPDEVFNSKISVDAAELLLVFGTIAISMVLMVIFGNWWSR |
| Ga0207662_107879353 | 3300025918 | Switchgrass Rhizosphere | HPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNWWSR |
| Ga0207700_105669401 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLTELFVGFHPDEVFNSKISVDAAELLLVFGTIAISM |
| Ga0210116_10351742 | 3300025959 | Natural And Restored Wetlands | MDLFGLFIGFHPDDVFGQAVSVDMAELLIVFGTIAASMVAMVAFGNWWSR |
| Ga0207676_113757242 | 3300026095 | Switchgrass Rhizosphere | MDIAALFIGFHPDDVFGRLISVDASELVIVFGTIAISMGFMVAFGNWWSR |
| Ga0209726_101743572 | 3300027815 | Groundwater | MDILVHLFIGWHPDDVFGRVVSVDMSELLVVFGTIASSLVALVIFGNWWSR |
| (restricted) Ga0255058_101490442 | 3300027872 | Seawater | MDILAALFIGFEPDEIFGRVFSVDFAELLVVFGTLSISMALMVVFGNWWSR |
| Ga0209814_102426782 | 3300027873 | Populus Rhizosphere | MDIAALFIGFHPDDVFGRLISVDAAELVIVFGTIAISMGFMVAFGNWWSR |
| Ga0209069_101717471 | 3300027915 | Watersheds | MDIAALFIGFHPDDVFGRLISVDASELVIVFGTIAISMAFMVAFGNWWSR |
| Ga0247825_103319922 | 3300028812 | Soil | MDLLATAIMFIGFHPDDVFDRKVSVDMAELIIVFGTIAISLGLMVWFGKWWSR |
| Ga0299906_102681342 | 3300030606 | Soil | MELLIPLFAGFHPDQVLGHLFSVDFSELVIVFGSIAVSLGALVWFGNWWSQ |
| Ga0299906_103574712 | 3300030606 | Soil | MDLFGLFIGFHPDDVFGRAISVDAAELVIVFGTIAASLGIMVWFGNWWSR |
| Ga0299906_106056062 | 3300030606 | Soil | MDLFSLFIGFHPDDVFGRAISVDAAELVIVFGTITISMVIMVWFGNWWSR |
| Ga0308201_104193271 | 3300031091 | Soil | KKMDIAALFIGFIPDEVFGSLISVDAAELVIVFGTIAISLGFMVAFGNWWSR |
| Ga0308197_101918081 | 3300031093 | Soil | EKKMDIAALFIGFIPDEVFGSLISVDAAELVIVFGTIAISMAFMVAFGNWWSR |
| Ga0315553_103940522 | 3300031652 | Salt Marsh Sediment | MDLALLFAGFHPDQVFGDVFSVDFAELLIVFGSIALSLGVLVWFGNWWSR |
| Ga0310121_1000368711 | 3300031801 | Marine | MDLLGLFIGFEADDLFGRLVSVDMAELLLVFGTLTLSMVAMVAFGNWWSR |
| Ga0326597_101265492 | 3300031965 | Soil | MDLLGPLFIGFEPDQIFGRVFSVDFSELLVVFGTISLSLGLMVVFGNWWSR |
| Ga0326597_102117432 | 3300031965 | Soil | MDLITQLFIGFHPDDVFGRAISVDAAELLIVFGTIAASLGVLVAFGNWWSR |
| Ga0326597_108581352 | 3300031965 | Soil | MEQLFIGFHPDDVFFRLVSVDMAELMVVFGFIAITMGIMVAFGNWWSR |
| Ga0326597_121085781 | 3300031965 | Soil | VELLSLLFIGWHPDDVFFRLVSVDMAELIIVFGTIAASLGLLVAFGNWWSR |
| Ga0307416_1034058512 | 3300032002 | Rhizosphere | MELLSTLFIGFHPDDIFLRQVSVDFAELLIVFGTIALSLGAMVVFGNWWSR |
| Ga0335070_114139211 | 3300032829 | Soil | MDLVSLFVGFHPDEVFNSKISVDAAELVLVFGTIAISMALMVVFGNWWSR |
| Ga0214471_1000098016 | 3300033417 | Soil | MDLFGLFIGFHPDDVFGQVVSVDMAELLIVFGTIALSMIAMVAFGNWWSR |
| Ga0214471_107427412 | 3300033417 | Soil | MDLYGLFIGFHPDDVFGRAVSVDMAELLVVFGTIAVSMGAMVLFGNWWSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |