Metagenome / Metatranscriptome Family F091213

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091213
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	106 residues
Representative Sequence	MLICNDVGAYREGFGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Number of Associated Samples	68
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.03 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.336 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.383 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.24% β-sheet: 0.00% Coil/Unstructured: 50.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00196	GerE	38.32
PF13592	HTH_33	1.87
PF02195	ParBc	1.87
PF04226	Transgly_assoc	0.93
PF02371	Transposase_20	0.93
PF00078	RVT_1	0.93
PF07394	DUF1501	0.93
PF13495	Phage_int_SAM_4	0.93
PF04542	Sigma70_r2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
All Organisms	root	All Organisms	47.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
cellular organisms	root	All Organisms → cellular organisms	47.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.15 %
Alsobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae	9.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.15 %
Alsobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	9.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Alsobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	9.35 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	8.41 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.34 %
Alsobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	9.35 %
Bradyrhizobium sp. G127	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	8.41 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1011741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1386	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1033235	Not Available	745	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1021775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	819	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1010331	Not Available	1633	Open in IMG/M
3300003218\|JGI26339J46600_10059347	Not Available	1003	Open in IMG/M
3300004062\|Ga0055500_10044999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	871	Open in IMG/M
3300004152\|Ga0062386_100416169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	1084	Open in IMG/M
3300004152\|Ga0062386_100639242	Not Available	871	Open in IMG/M
3300004152\|Ga0062386_100841540	Not Available	757	Open in IMG/M
3300004152\|Ga0062386_100959482	Not Available	708	Open in IMG/M
3300004152\|Ga0062386_101187926	Not Available	634	Open in IMG/M
3300005204\|Ga0068997_10010550	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300005205\|Ga0068999_10049377	Not Available	740	Open in IMG/M
3300005206\|Ga0068995_10013089	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300005213\|Ga0068998_10008249	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300005213\|Ga0068998_10056230	Not Available	790	Open in IMG/M
3300005218\|Ga0068996_10138179	Not Available	588	Open in IMG/M
3300009196\|Ga0103745_10051414	Not Available	592	Open in IMG/M
3300009295\|Ga0103747_10121095	Not Available	680	Open in IMG/M
3300009796\|Ga0105086_110727	Not Available	598	Open in IMG/M
3300009800\|Ga0105069_1052471	Not Available	520	Open in IMG/M
3300009802\|Ga0105073_1017587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	726	Open in IMG/M
3300009804\|Ga0105063_1067130	Not Available	547	Open in IMG/M
3300009806\|Ga0105081_1049491	Not Available	610	Open in IMG/M
3300009870\|Ga0131092_10070760	All Organisms → cellular organisms → Bacteria	4392	Open in IMG/M
3300009870\|Ga0131092_10132886	All Organisms → cellular organisms → Bacteria	2798	Open in IMG/M
3300009870\|Ga0131092_10875708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	740	Open in IMG/M
3300014308\|Ga0075354_1018909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	1083	Open in IMG/M
3300014317\|Ga0075343_1181948	Not Available	538	Open in IMG/M
3300014318\|Ga0075351_1002711	All Organisms → cellular organisms → Bacteria → Proteobacteria	2299	Open in IMG/M
3300014318\|Ga0075351_1011978	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300014318\|Ga0075351_1102072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300014320\|Ga0075342_1005731	All Organisms → cellular organisms → Bacteria	2571	Open in IMG/M
3300014324\|Ga0075352_1003920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2594	Open in IMG/M
3300014324\|Ga0075352_1141145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300014871\|Ga0180095_1048547	Not Available	748	Open in IMG/M
3300015258\|Ga0180093_1052848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	921	Open in IMG/M
3300017939\|Ga0187775_10110880	Not Available	934	Open in IMG/M
3300017961\|Ga0187778_10261856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	1112	Open in IMG/M
3300017961\|Ga0187778_10411194	Not Available	889	Open in IMG/M
3300017966\|Ga0187776_10916080	Not Available	638	Open in IMG/M
3300017966\|Ga0187776_11526754	Not Available	514	Open in IMG/M
3300017973\|Ga0187780_10144606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1648	Open in IMG/M
3300017973\|Ga0187780_10738313	Not Available	711	Open in IMG/M
3300017973\|Ga0187780_10887029	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300018058\|Ga0187766_10066602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2139	Open in IMG/M
3300018058\|Ga0187766_10330896	Not Available	993	Open in IMG/M
3300018058\|Ga0187766_10758791	Not Available	674	Open in IMG/M
3300018086\|Ga0187769_10112597	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300018086\|Ga0187769_10167182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1618	Open in IMG/M
3300018086\|Ga0187769_10226345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	1388	Open in IMG/M
3300018086\|Ga0187769_10304326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	1192	Open in IMG/M
3300018086\|Ga0187769_10347555	Not Available	1112	Open in IMG/M
3300018086\|Ga0187769_11135335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	591	Open in IMG/M
3300018086\|Ga0187769_11237372	Not Available	565	Open in IMG/M
3300018089\|Ga0187774_11308423	Not Available	526	Open in IMG/M
3300018090\|Ga0187770_10530111	Not Available	933	Open in IMG/M
3300019228\|Ga0180119_1053007	Not Available	519	Open in IMG/M
3300019229\|Ga0180116_1137806	Not Available	562	Open in IMG/M
3300019229\|Ga0180116_1329112	Not Available	561	Open in IMG/M
3300019238\|Ga0180112_1341226	Not Available	692	Open in IMG/M
3300019248\|Ga0180117_1020011	Not Available	556	Open in IMG/M
3300019248\|Ga0180117_1171286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	827	Open in IMG/M
3300019257\|Ga0180115_1420165	Not Available	924	Open in IMG/M
3300019275\|Ga0187798_1527137	Not Available	522	Open in IMG/M
3300019275\|Ga0187798_1689684	Not Available	521	Open in IMG/M
3300019278\|Ga0187800_1364199	Not Available	515	Open in IMG/M
3300019284\|Ga0187797_1408229	Not Available	934	Open in IMG/M
3300019284\|Ga0187797_1706065	Not Available	582	Open in IMG/M
3300019284\|Ga0187797_1903821	Not Available	523	Open in IMG/M
3300020065\|Ga0180113_1316930	Not Available	627	Open in IMG/M
3300025955\|Ga0210071_1053078	Not Available	517	Open in IMG/M
3300025955\|Ga0210071_1053476	Not Available	515	Open in IMG/M
3300025962\|Ga0210070_1010943	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300025965\|Ga0210090_1003073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2188	Open in IMG/M
3300025965\|Ga0210090_1028570	Not Available	761	Open in IMG/M
3300025973\|Ga0210145_1001769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1873	Open in IMG/M
3300025973\|Ga0210145_1017201	Not Available	800	Open in IMG/M
3300025979\|Ga0210078_1024720	Not Available	789	Open in IMG/M
3300026047\|Ga0208658_1005497	Not Available	968	Open in IMG/M
3300026047\|Ga0208658_1007462	Not Available	841	Open in IMG/M
3300026048\|Ga0208915_1024873	Not Available	554	Open in IMG/M
3300026102\|Ga0208914_1004171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1469	Open in IMG/M
3300027013\|Ga0209884_1006262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	1074	Open in IMG/M
3300027041\|Ga0209876_1011779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	656	Open in IMG/M
3300027812\|Ga0209656_10063352	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300027812\|Ga0209656_10414162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	602	Open in IMG/M
3300027824\|Ga0209040_10035120	All Organisms → cellular organisms → Bacteria	3133	Open in IMG/M
3300027825\|Ga0209039_10106219	Not Available	1199	Open in IMG/M
3300031354\|Ga0307446_1067219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	1012	Open in IMG/M
3300031359\|Ga0307426_1059669	All Organisms → cellular organisms → Bacteria → Proteobacteria	1547	Open in IMG/M
3300031364\|Ga0307445_10186700	Not Available	734	Open in IMG/M
3300031585\|Ga0315534_1037662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	2122	Open in IMG/M
3300031585\|Ga0315534_1055655	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300031585\|Ga0315534_1084787	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300031585\|Ga0315534_1133586	Not Available	921	Open in IMG/M
3300031699\|Ga0315535_1020586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2914	Open in IMG/M
3300032061\|Ga0315540_10285486	Not Available	687	Open in IMG/M
3300032062\|Ga0315551_10042020	All Organisms → cellular organisms → Bacteria → Proteobacteria	2448	Open in IMG/M
3300033291\|Ga0307417_10154664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	905	Open in IMG/M
3300034090\|Ga0326723_0064153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	1565	Open in IMG/M
3300034090\|Ga0326723_0095571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1283	Open in IMG/M
3300034090\|Ga0326723_0202907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	879	Open in IMG/M
3300034147\|Ga0364925_0131317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	902	Open in IMG/M
3300034147\|Ga0364925_0222819	Not Available	698	Open in IMG/M
3300034151\|Ga0364935_0217975	Not Available	617	Open in IMG/M
3300034690\|Ga0364923_0049906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Engineered	Engineered	2.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.34%
Aquatic	Environmental → Aquatic	44.86%
Wastewater	Engineered → Wastewater	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.79%
Marine	Environmental → Aquatic → Marine	24.30%
Freshwater	Environmental → Aquatic → Freshwater	18.69%
Floodplain	Environmental → Terrestrial → Floodplain	3.74%
Peat	Environmental → Terrestrial → Peat	2.80%
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.80%
Sediment	Environmental → Aquatic → Sediment	1.87%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	35.51%
Wetlands	Environmental → Aquatic → Marine → Wetlands	14.02%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.28%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.35%
Sand	Environmental → Terrestrial → Soil → Sand	6.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	35.51%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	14.02%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	10.28%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.35%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	18.69%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	14.02%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	11.21%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.35%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.48%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	6.54%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.54%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	5.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	2.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.87%
Wastewater Sludge	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge	1.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300009196	Microbial communities of wastewater sludge from Singapore - Sludge1_b2_February	Environmental	Open in IMG/M
3300009295	Microbial communities of wastewater sludge from Singapore - Sludge5_b2_February	Environmental	Open in IMG/M
3300009796	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_0_10	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014871	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1Da	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025955	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025962	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025965	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025973	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025979	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026047	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd (SPAdes)	Environmental	Open in IMG/M
3300026048	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026102	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027041	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300031354	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-20	Environmental	Open in IMG/M
3300031359	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40	Environmental	Open in IMG/M
3300031364	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-30	Environmental	Open in IMG/M
3300031585	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40	Environmental	Open in IMG/M
3300031699	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20	Environmental	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032062	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-90	Environmental	Open in IMG/M
3300033291	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10117411	3300000579	Forest Soil	LGTESVELLGLPRPQAELLQPGAGRNELVVDQVLANFVAELFVILHPAALPMLERMFGDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET*
AP72_2010_repI_A01DRAFT_10332352	3300000579	Forest Soil	VRTRGEMLICSEIDALRREGLCIESVGQSTAQEKLRSGAGQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
AP72_2010_repI_A10DRAFT_10217752	3300000651	Forest Soil	VIGQTPRTSGEVLICNDTDTPRVGLGTESVELLGLPRPQAELLQPGAGRNELVVDQVLANFVAELFVILHPAALPMLERMFGDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET*
AP72_2010_repI_A001DRAFT_10103312	3300000893	Forest Soil	VRTRGEMLICSEIDALRREGLCIESVGQSTAQEKLRSGAGQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET*
JGI26339J46600_100593472	3300003218	Bog Forest Soil	MLICNEIDALHREGLGIENVGLSTPRVKLRSGAEQNELAVDQVLANFVAELFTTLHPATLPMLEGMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN*
Ga0055500_100449992	3300004062	Natural And Restored Wetlands	MGRAVQMLICNEDAPRRETRGIGRETLGIQSVGLSTPREILCSGVGQNELAVDQVLANFVAELLVVLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0062386_1004161691	3300004152	Bog Forest Soil	MLICNGIDSYQDNLGIERLGLFTPREKLRSGAEQTELAVDQVLANFVAELFATLHPATLPMLEGMFEDVKQDAETDGEWDLKRRADIGIAAARIAAREQEAIEN*
Ga0062386_1006392421	3300004152	Bog Forest Soil	MLICNDIDAHRKGLGMKSVGLSTPREKLRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAEIDGEWGLKRRAEIGTAAARIAAREQEAIEN*
Ga0062386_1008415402	3300004152	Bog Forest Soil	MLICDEIDALHRADLGIENVELSTPRVKLRSGTEQNELAVDQVLANFVAELFAILHPATLPMLESMFEGVKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0062386_1009594821	3300004152	Bog Forest Soil	MLICNAMDASRVGMMSIPREELLRSDAGQNELAADRVLASFVAELFATLHPATLPMLERMFEDVKQDAETDGEEDLGRRAKIGIAAVRIAVREQEAIET*
Ga0062386_1011879261	3300004152	Bog Forest Soil	MLICNEIDALHREGLGIENVGLSTPRVKLRSGAEQNELAVDQVLANFVAELFTTLHPATLPMLEGMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQ
Ga0068997_100105501	3300005204	Natural And Restored Wetlands	MRKHVNDKEKVMTSGAMLICNNIDAPPREGLRMESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEEIKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN
Ga0068999_100493771	3300005205	Natural And Restored Wetlands	MTSGAMLICNNIDAPPREGLRMESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEEIKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN*
Ga0068995_100130892	3300005206	Natural And Restored Wetlands	LRMESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEEIKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0068998_100082492	3300005213	Natural And Restored Wetlands	LGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET*
Ga0068998_100562302	3300005213	Natural And Restored Wetlands	MGRAVQMLICNEDAPRRETRGIGRETLGIQSVGLSTPREKLRSGVGQKELAVDQVLANFVAELLVVLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0068996_101381791	3300005218	Natural And Restored Wetlands	VQMLICNEDAPRRETRGIGRETLGIQSVGLSTPREKLRSGVGQNELAVDQVLANFVAELLVVLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0103745_100514141	3300009196	Wastewater Sludge	MLICNEMDALHREGLGKKSAGLSKARAKLRSGVEQTEFAVDQVLANFVAELFATLHPATLPMLKRMFEDVKQDAETDGEWELKRRADIGIAAASIAAREQEAIEN*
Ga0103747_101210951	3300009295	Wastewater Sludge	MLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLKRMFEDVKQDAETDGEWELKRRAEIGIAAASIAAREQEAIEN*
Ga0105086_1107272	3300009796	Groundwater Sand	MGRETLGIESVGLSTPREKLRSGAGQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN*
Ga0105069_10524712	3300009800	Groundwater Sand	TPREKLRSDAGQNELAADQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGETELKRRAEIGIAAARIAAREQEAIEN*
Ga0105073_10175871	3300009802	Groundwater Sand	GRETLGIESVGLSTPREKLRSGVGQNELAADQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGERELKRRAEIGIAAARIAAREQEAIEN*
Ga0105063_10671301	3300009804	Groundwater Sand	MESVRLFTPREKLRSDAGQNELAADQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGERELKRRAEIGIAAARIAARELEAIEN*
Ga0105081_10494911	3300009806	Groundwater Sand	MGRAVQMLICNEDAPRRETRGKGRETLGIESVGLSTPREKLRSGVGQNELAVDQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGERELKRRAEIGIAAARIAAREQEAIEN*
Ga0131092_100707604	3300009870	Activated Sludge	MLICNEMDALHREGLGKKSAGLSKARAKLRSGVEQTEFAVDQVLAKFVAELFAILHPATLPMLKRMFEDVKQDAETDGEWELKRRADIGIAAASIAAREQEAIEN*
Ga0131092_101328862	3300009870	Activated Sludge	MLICCEIDASRRESLGIESVELSTLQEGSRSDAGQNELTVDKALANFVADLFVILHPATLPMLERMFEDVKRDAETDGEWELKRRAEIGIAAARIAAREQEAIEN*
Ga0131092_108757082	3300009870	Activated Sludge	EELGLENVGLSIPRAKLRSGVEKTELDVDQVLAKFVAELFVILHPSTLPMLERMFEGVKQDAETDGEWALKRRAEIGIAAARIAAREHEAIEN*
Ga0075354_10189092	3300014308	Natural And Restored Wetlands	MLICNDVDAYRGGLRIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN*
Ga0075343_11819481	3300014317	Natural And Restored Wetlands	MLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAARELEAIEN*
Ga0075351_10027112	3300014318	Natural And Restored Wetlands	MLICNDVGAYREGFGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET*
Ga0075351_10119782	3300014318	Natural And Restored Wetlands	MRKHVNDKEKVMTSAVLIYNNINAPPREGLRMESVGLPTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN*
Ga0075351_11020722	3300014318	Natural And Restored Wetlands	LGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFIILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAI
Ga0075342_10057313	3300014320	Natural And Restored Wetlands	MLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARTAAREQEAIEN*
Ga0075352_10039202	3300014324	Natural And Restored Wetlands	MLICNDVDAYRGGLRIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET*
Ga0075352_11411451	3300014324	Natural And Restored Wetlands	RMESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAARELEAIEN*
Ga0180095_10485471	3300014871	Soil	MLICNHIDALREGFGIKNVGLYTPREESLRSGAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAARIAAREQEAIET*
Ga0180093_10528482	3300015258	Soil	GIKSVGLHTPREESLRSGAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAEADGEWGLKRRAEIGIAADRIAAREQEAIET*
Ga0187775_101108801	3300017939	Tropical Peatland	MGQTVRTRGEMLICNEIDAPRREGLGVESVEQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIALREQEAIET
Ga0187778_102618562	3300017961	Tropical Peatland	MLICNEIDALHGEGLGIESLGLSAPRVKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLEGMFEDVKQDAEIDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0187778_104111942	3300017961	Tropical Peatland	MGQTVRTRGEMLICNEVDAPRREGLGVESVGQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIEN
Ga0187776_109160801	3300017966	Tropical Peatland	VIGQTVRTRGEMLICNEVDAPRREGLGVESVGQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0187776_115267541	3300017966	Tropical Peatland	EGQCIESVGQSTAREKLRSGAGQNKLAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0187780_101446063	3300017973	Tropical Peatland	GEMLICYEIDAPRRQGLGIESVGGQPTPREKLRSGDGQNELAADQVLANFVAELYVILHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0187780_107383132	3300017973	Tropical Peatland	MLICNEIDALHREGLGIESLGLSAPRVKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLKRMFEDVKQDAETDGEWELKRRAEIGIAAASIAAREQEAIEN
Ga0187780_108870291	3300017973	Tropical Peatland	VIGQTVRTRGEMLICNEIDALRREGQCIESVGQSTAREKLRSGAGQNKLAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0187766_100666022	3300018058	Tropical Peatland	VRTRGEMLICNEIDAPRREGLGVESVGQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0187766_103308961	3300018058	Tropical Peatland	EPHVRFCDSRGRYRLHRGWNMTTRSFCTIEQTVTTSGEVLICNDIDTLREGLGMENVGLSTPRDGFRSGAGQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIEN
Ga0187766_107587911	3300018058	Tropical Peatland	VTTSGEMLICNDIDVYREGLGIESVGLSTPREKLRSGAGQNERVADQALASFVAGLFATLHPATLPMLERMFEDVKQDAETDGEWALMRRAEIGIAAARIAVREQEAIET
Ga0187769_101125972	3300018086	Tropical Peatland	MLICSEIDALHREDLGKKGVGLSTPRVKLRSGAKQNELAVDQVLANFVAELFATLHPATLPMLKRMFEDVKQDAETDGEWELKRRAEIGIAAASIAAREQEAIEN
Ga0187769_101671823	3300018086	Tropical Peatland	MLICNEIDAPRREGLGIESVGGQSTPREKLRSGDRQRELAVDQVLANFVAELFVILHPATLPMLERMFDDVNHDAETDGEWGLKRRADIGIAAARIAAREQEAIEN
Ga0187769_102263452	3300018086	Tropical Peatland	MLICYEIDAPRRQGLGIESVGGQPTPREKLRSGDGQNELAADQVLANFVAELFVILHPATLPMLERMFEDVKRDAETDGEQALKRRAEIGIAAARTAAREQEAIEN
Ga0187769_103043262	3300018086	Tropical Peatland	MLICNEIDALHREGLGIESLGLSAPRVKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLEGMFEDVKQDAEIDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0187769_103475551	3300018086	Tropical Peatland	VIGQSVTTSGEMLICNDVDAYREGLRMESVRLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHRATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0187769_111353352	3300018086	Tropical Peatland	RPQAELLQPGASRNELAVDQVLAKFVAELFVILRPATLPMLERMFEDVKQDAEIDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0187769_112373722	3300018086	Tropical Peatland	DAPRREGLGVESVGQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0187774_113084232	3300018089	Tropical Peatland	VIGHSVTTSGEMLICNDVDAYREGLRIEGVCLSTPREKLRSGAGQNELAVDQALANFVAELFAILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0187770_105301111	3300018090	Tropical Peatland	VRTRGEMLICYEIDAPRRQGLGIESVGGQPTPREKLRSGDGQNELAADQVLANFVAELFVILHPATLPMLERMFEDVKRDAETDGEQALKRRAEIGIAAARTAAREQEAIEN
Ga0180119_10530071	3300019228	Groundwater Sediment	VRTSGEMLICNHIDALREGFGIKNVGLYTPREESLRSRAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVTIAVREQEAIET
Ga0180116_11378061	3300019229	Groundwater Sediment	IGQTVRASGEMLICNDIDAYREGLDLESVGLSTPREVRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0180116_13291121	3300019229	Groundwater Sediment	ADFWRTFLALIKREKVSAIGVTVRTSGEMLICNHIDALREGVGIKSVGLHTPREESLRSGAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0180112_13412261	3300019238	Groundwater Sediment	MLICNHIDALREGFGIKNVGLYTPREESLRSRAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0180117_10200112	3300019248	Groundwater Sediment	RTSGEMLICNHIDALREGVGIKSVGLHTPREESLRSGAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0180117_11712862	3300019248	Groundwater Sediment	DFWRIFLALIQRETVSAIGETVRTSGEMLICNHIDALREGFGIKNVGLYTPREESLRSRAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0180115_14201651	3300019257	Groundwater Sediment	VRASGEMLICNDIDAYREGLDLESVGLSTPREKLRSGAGQNELAVDQVANFVAELFTILHPATLPMLERMFEDVKKDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0187798_15271371	3300019275	Peatland	MLICSEIDALHREGLGKKSVGLSTPRVKLRSGAKQNELAVDQVLANFVAELFATLHPATLPMLKRMFEDVKQDAETDGEWELKRRAEIGIAAASIAAREQEAIEN
Ga0187798_16896842	3300019275	Peatland	GLGVESVGQSTSREKLRSGAEQNGLVVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0187800_13641991	3300019278	Peatland	VRTNGEVLICNDTDTPQVDWGMESVGLPTPRVELLQLGASGSELAVDRMLANFVAELFVILHPAALPMLERMFEDVKRDAETDGEQELERRAEIGIAAARIAAREQEAIET
Ga0187797_14082292	3300019284	Peatland	MGQTVRTRGEMLICNEVDAPRREGLGVESVGQSTSREKLRSGAEQNGLVVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0187797_17060651	3300019284	Peatland	MLICSEIDALHREGRGKKSVGLSTPRVKLRSGAKQNELAVDQVLANFVAELFATLHPATLPMLKRMFEDVKQDAETDGEWELKRRAEIGIAAASIAAREQEAIEN
Ga0187797_19038212	3300019284	Peatland	VRTNAEVLICNDTDTPQVDWGMESVALPTPRVELLQLGASGSELAVDRMLANFVAELFVILHPAALPMLERMFEDVKRDAETDGEQALKRRAEIGIAAARTAAREQEAIEN
Ga0180113_13169302	3300020065	Groundwater Sediment	ADFWRIVLALIKRNFWRIVLALIKRKRSAIGATVRTSGKMLICNHIDALREGFGIKNVGLYTPREESLRSRAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0210071_10530781	3300025955	Natural And Restored Wetlands	QTVRTSGEMLICNDVDAYRGGLRIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAEVFVILHPATLPMLERMFEDVQQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0210071_10534761	3300025955	Natural And Restored Wetlands	ICNNIDAPPREGLRMESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEEIKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN
Ga0210070_10109432	3300025962	Natural And Restored Wetlands	YRGGLRIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVQQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0210090_10030732	3300025965	Natural And Restored Wetlands	MESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEDVQQDAETDGEWGLKRRAEIGIAAARIAAREQEAIEN
Ga0210090_10285701	3300025965	Natural And Restored Wetlands	EGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0210145_10017693	3300025973	Natural And Restored Wetlands	VRTSGEMLICNDVDAYRGGLRIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0210145_10172012	3300025973	Natural And Restored Wetlands	MESVGLSTPREKLRSDAGQELAVDQVLANFVAELFATLHPATLPMLERMFEEIKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN
Ga0210078_10247201	3300025979	Natural And Restored Wetlands	MGRAVQILICNEDAPRRETRGIGRETLGIQSVGLSTPREKLRSGVGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0208658_10054971	3300026047	Natural And Restored Wetlands	MGRAVQMLICNEDAPRRETRGIGRETLGIQSVGLSTPREKLRSGVGQKELAVDQVLANFVAELLVVLHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARVAAREQEAIEN
Ga0208658_10074621	3300026047	Natural And Restored Wetlands	VRTSGQMLICNDVGAYREGFGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0208915_10248731	3300026048	Natural And Restored Wetlands	VRTNGQMLICNDVGAYREGFGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGERELKRRAEIGIAAARI
Ga0208914_10041712	3300026102	Natural And Restored Wetlands	MGRAVQMLICNEDAPRRETRGIGRETLGIQSVGLSTPREILRSGVGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0209884_10062622	3300027013	Groundwater Sand	VRTSGEMLICNELDAPRREGLGMESVRLFTPREKLRSDAGQNELAADQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGETELKRRAEIGIAAARIAARELEAIEN
Ga0209876_10117792	3300027041	Groundwater Sand	IESVGLSTPREKLRSGVGQNELAADQVLANFVAELFAILHPATLPMLERMFEDVKQDAETDGETELKRRAEIGIAAARIAAREQEAIEN
Ga0209656_100633523	3300027812	Bog Forest Soil	VRTSGAMLICNEIDALHREGLGIENVGLSTPRVKLRSGAEQNELAVDQVLANFVAELFTTLHPATLPMLEGMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0209656_104141622	3300027812	Bog Forest Soil	MKSVGLSTPRDKLPSSDGQNELAVDQVLAKFVAELFATLHPATLPMLERMFEDVKQDAETDGEWELKRRAGIGIAAARIAAREQEAIEN
Ga0209040_100351203	3300027824	Bog Forest Soil	MLICNEIDALHREGLGIENVGLSTPRVKLRSGAEQNELAVDQVLANFVAELFTTLHPATLPMLEGMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0209039_101062192	3300027825	Bog Forest Soil	MLICNDIDAHRKGLGMKSVGLSTPREKLRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAEIDGEWGLKRRAEIGTAAARIAAREQEAIEN
Ga0307446_10672192	3300031354	Salt Marsh	VRASGEMLICKDVGAYRKGLGIEGVCLSTPQEKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIET
Ga0307426_10596691	3300031359	Salt Marsh	VRTSGEMLICNDVGACREGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAA
Ga0307445_101867002	3300031364	Salt Marsh	VTGQTVRASGEMLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAA
Ga0315534_10376623	3300031585	Salt Marsh Sediment	VRASGEMLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0315534_10556551	3300031585	Salt Marsh Sediment	VRTSGEMLICNDVGACREGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0315534_10847872	3300031585	Salt Marsh Sediment	MLICKDVGAYRKGLGIEGVCLSTPQEKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARTAAREQEAIET
Ga0315534_11335861	3300031585	Salt Marsh Sediment	VRTSGEMLICNDVGAYREGLGIEGVCLPTPREKLRSDAGQNELAVDQVLANFVAELFATLHPATLPMLERMFENVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIEN
Ga0315535_10205862	3300031699	Salt Marsh Sediment	VRTSGEMLICNDVGACREGLGIEGVCLSTPQEKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0315540_102854861	3300032061	Salt Marsh Sediment	VRASGEMLICKDVGAYRKGLGIEGVCLSTPREKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0315551_100420204	3300032062	Salt Marsh Sediment	VRASGEMLICKDVGAYRKGLGIEGVCLSTPQEKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARTAAREQEAIET
Ga0307417_101546642	3300033291	Salt Marsh	TGQTVRASGEMLICKDVGAYRKGLGIEGVCLSTPQEKLRSGAGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAAREQEAIEN
Ga0326723_0064153_885_1202	3300034090	Peat Soil	MLICNEIDAPRREGLGMESVGLSTPREQLRSGPGQNELAVDQVLANFVAELFTILHPAILPMLERMFEDVKQDAETDGEWELKRRAEIGIAAARIAVREQEAIET
Ga0326723_0095571_64_381	3300034090	Peat Soil	MLICNEIDAPRREGLAVESVGQSTPREKLRSGAEQNELAVDQVLANFVAELFATLHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0326723_0202907_100_360	3300034090	Peat Soil	VGQSTPREKLRSGAEQNELAVDQALANFVAELFATLHPATLPMLERMFEDVKQDAENDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0364925_0131317_72_383	3300034147	Sediment	MLICNDIDAYREGLDLESVGLSTPREVRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0364925_0222819_234_551	3300034147	Sediment	MLICNHIDALREGVGIKSVGLHTPREESLRSGAGQNELAADRALAIFVAELFVTLHPATLPMLERMFEDVKQDAETDSEWELKRRAEIGIAAVRIAVREQEAIET
Ga0364935_0217975_282_596	3300034151	Sediment	MLICNDIDAYREGLDLESVGLSTPREKLRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAEADGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0364923_0049906_1_288	3300034690	Sediment	MLICNDIDAYREGLDLESVGLSTPREKLRSGAGQNELAVDQVLANFVAELFTILHPATLPMLERMFEDVKQDAEADGEWGLKRRAEIGIAAARIAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091213

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences