NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089037

Metagenome / Metatranscriptome Family F089037

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089037
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 56 residues
Representative Sequence MSDMKSKIISRLISGKQWKPGEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKR
Number of Associated Samples 74
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.68 %
% of genes near scaffold ends (potentially truncated) 24.77 %
% of genes from short scaffolds (< 2000 bps) 86.24 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.881 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater
(28.440 % of family members)
Environment Ontology (ENVO) Unclassified
(90.826 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(75.229 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.05%    β-sheet: 9.52%    Coil/Unstructured: 71.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF00478IMPDH 38.53
PF00268Ribonuc_red_sm 33.03
PF00383dCMP_cyt_deam_1 6.42
PF03796DnaB_C 2.75
PF03477ATP-cone 0.92
PF11753DUF3310 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 33.03
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 2.75
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 2.75


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.88 %
All OrganismsrootAll Organisms43.12 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000140|LPfeb09P26500mDRAFT_c1018407Not Available786Open in IMG/M
3300000152|LPjun08P12500mDRAFT_c1042292Not Available643Open in IMG/M
3300000157|LPaug08P261000mDRAFT_c1001197All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae4464Open in IMG/M
3300000219|LPfeb10P161000mDRAFT_c1005586All Organisms → Viruses2775Open in IMG/M
3300000222|LPjun09P12500mDRAFT_1002500All Organisms → Viruses4862Open in IMG/M
3300000247|LPaug09P26500mDRAFT_1009171Not Available1731Open in IMG/M
3300000248|LPfeb09P12500mDRAFT_1002835Not Available3022Open in IMG/M
3300000258|LP_J_09_P20_1000DRAFT_1028001Not Available658Open in IMG/M
3300000260|LP_A_09_P20_500DRAFT_1001521All Organisms → Viruses4992Open in IMG/M
3300000323|LPaug09P202000mDRAFT_1017344All Organisms → Viruses → Predicted Viral1190Open in IMG/M
3300001683|GBIDBA_10012042Not Available4674Open in IMG/M
3300001683|GBIDBA_10013758Not Available4232Open in IMG/M
3300001940|GOS2222_1013265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium789Open in IMG/M
3300003269|JGI26112J46591_1024764Not Available747Open in IMG/M
3300003514|FS821DNA_1045163All Organisms → Viruses → Predicted Viral1053Open in IMG/M
3300003537|FS903DNA_1208692All Organisms → cellular organisms → Eukaryota657Open in IMG/M
3300004280|Ga0066606_10036268All Organisms → Viruses → Predicted Viral2029Open in IMG/M
3300005402|Ga0066855_10090180All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium958Open in IMG/M
3300005402|Ga0066855_10130387Not Available801Open in IMG/M
3300005402|Ga0066855_10262061Not Available567Open in IMG/M
3300005431|Ga0066854_10257918Not Available588Open in IMG/M
3300005969|Ga0066369_10279509All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium536Open in IMG/M
3300006012|Ga0066374_10054363Not Available1127Open in IMG/M
3300006310|Ga0068471_1061406All Organisms → Viruses → Predicted Viral2455Open in IMG/M
3300006310|Ga0068471_1604034Not Available1783Open in IMG/M
3300006313|Ga0068472_10761066All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium945Open in IMG/M
3300006326|Ga0068477_1505061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium559Open in IMG/M
3300006335|Ga0068480_1484252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium728Open in IMG/M
3300006335|Ga0068480_1656024All Organisms → cellular organisms → Bacteria → Terrabacteria group644Open in IMG/M
3300006336|Ga0068502_1510824Not Available582Open in IMG/M
3300006339|Ga0068481_1378377Not Available2813Open in IMG/M
3300006339|Ga0068481_1576825All Organisms → Viruses → Predicted Viral1023Open in IMG/M
3300006339|Ga0068481_1576834All Organisms → Viruses → Predicted Viral1209Open in IMG/M
3300006339|Ga0068481_1576840Not Available1285Open in IMG/M
3300006340|Ga0068503_10261773Not Available8191Open in IMG/M
3300006340|Ga0068503_10432618Not Available2985Open in IMG/M
3300006340|Ga0068503_10778286Not Available672Open in IMG/M
3300006341|Ga0068493_10238456All Organisms → Viruses → Predicted Viral2536Open in IMG/M
3300006414|Ga0099957_1128844Not Available1665Open in IMG/M
3300006414|Ga0099957_1175834All Organisms → Viruses → Predicted Viral1387Open in IMG/M
3300006567|Ga0099958_1081319All Organisms → Viruses → Predicted Viral1421Open in IMG/M
3300006900|Ga0066376_10225691All Organisms → Viruses → Predicted Viral1115Open in IMG/M
3300006902|Ga0066372_10600915Not Available655Open in IMG/M
3300007291|Ga0066367_1055539Not Available1407Open in IMG/M
3300007715|Ga0102827_1144591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium546Open in IMG/M
3300007771|Ga0105700_1297835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium552Open in IMG/M
3300009080|Ga0102815_10546246Not Available649Open in IMG/M
3300009173|Ga0114996_11247042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium519Open in IMG/M
3300009409|Ga0114993_10214232All Organisms → Viruses → Predicted Viral1486Open in IMG/M
3300009409|Ga0114993_10699773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium738Open in IMG/M
3300009409|Ga0114993_11249489Not Available522Open in IMG/M
3300009441|Ga0115007_11338919Not Available503Open in IMG/M
3300009593|Ga0115011_10260120Not Available1305Open in IMG/M
3300010153|Ga0098059_1236585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium706Open in IMG/M
3300020263|Ga0211679_1010169Not Available2249Open in IMG/M
3300020347|Ga0211504_1020998Not Available1747Open in IMG/M
3300020389|Ga0211680_10026127All Organisms → Viruses → Predicted Viral2922Open in IMG/M
3300020389|Ga0211680_10091877Not Available1279Open in IMG/M
3300020389|Ga0211680_10196332Not Available779Open in IMG/M
3300020389|Ga0211680_10307906Not Available586Open in IMG/M
3300020399|Ga0211623_10043435Not Available1528Open in IMG/M
3300020447|Ga0211691_10208688Not Available755Open in IMG/M
3300020458|Ga0211697_10253585Not Available728Open in IMG/M
3300021065|Ga0206686_1111270Not Available815Open in IMG/M
3300021084|Ga0206678_10293275Not Available784Open in IMG/M
3300021084|Ga0206678_10317379Not Available747Open in IMG/M
3300021089|Ga0206679_10334331Not Available816Open in IMG/M
3300021352|Ga0206680_10183022Not Available813Open in IMG/M
3300021352|Ga0206680_10198935Not Available777Open in IMG/M
3300021352|Ga0206680_10212488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium751Open in IMG/M
3300021359|Ga0206689_11038037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium507Open in IMG/M
3300021442|Ga0206685_10048532Not Available1374Open in IMG/M
3300021442|Ga0206685_10164482All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium742Open in IMG/M
3300021442|Ga0206685_10336624Not Available515Open in IMG/M
3300021443|Ga0206681_10347604All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium573Open in IMG/M
3300026213|Ga0208131_1102275Not Available694Open in IMG/M
3300027553|Ga0208947_1149106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium504Open in IMG/M
3300027685|Ga0209554_1107835Not Available902Open in IMG/M
3300027700|Ga0209445_1095548Not Available914Open in IMG/M
3300027838|Ga0209089_10292282Not Available931Open in IMG/M
3300027844|Ga0209501_10446276Not Available754Open in IMG/M
3300028190|Ga0257108_1020662All Organisms → Viruses → Predicted Viral1974Open in IMG/M
3300028190|Ga0257108_1049954All Organisms → Viruses → Predicted Viral1257Open in IMG/M
3300028192|Ga0257107_1062669All Organisms → Viruses → Predicted Viral1136Open in IMG/M
3300028488|Ga0257113_1024851All Organisms → Viruses → Predicted Viral1988Open in IMG/M
3300028488|Ga0257113_1077288Not Available1046Open in IMG/M
3300028488|Ga0257113_1179646All Organisms → cellular organisms → Bacteria → Terrabacteria group626Open in IMG/M
3300031757|Ga0315328_10305130Not Available929Open in IMG/M
3300031757|Ga0315328_10378963Not Available822Open in IMG/M
3300031774|Ga0315331_10993352Not Available572Open in IMG/M
3300031851|Ga0315320_10640544Not Available692Open in IMG/M
3300031861|Ga0315319_10482279Not Available620Open in IMG/M
3300031861|Ga0315319_10633781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium527Open in IMG/M
3300031886|Ga0315318_10181606All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1196Open in IMG/M
3300031886|Ga0315318_10452353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium734Open in IMG/M
3300031886|Ga0315318_10545138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium659Open in IMG/M
3300032019|Ga0315324_10095101All Organisms → Viruses → Predicted Viral1119Open in IMG/M
3300032019|Ga0315324_10177693Not Available795Open in IMG/M
3300032019|Ga0315324_10261705All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae635Open in IMG/M
3300032032|Ga0315327_10294916Not Available1018Open in IMG/M
3300032032|Ga0315327_10648402Not Available649Open in IMG/M
3300032048|Ga0315329_10451422Not Available685Open in IMG/M
3300032048|Ga0315329_10708611Not Available531Open in IMG/M
3300032048|Ga0315329_10751597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium513Open in IMG/M
3300032278|Ga0310345_10743026Not Available952Open in IMG/M
3300032360|Ga0315334_10249458All Organisms → Viruses → Predicted Viral1460Open in IMG/M
3300032360|Ga0315334_10640177Not Available918Open in IMG/M
3300032360|Ga0315334_11371540Not Available608Open in IMG/M
3300032820|Ga0310342_103159953Not Available547Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater28.44%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine19.27%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine16.51%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine9.17%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.17%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.50%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.75%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.83%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.83%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent1.83%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume1.83%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.92%
Diffuse Vent Fluid, Hydrothermal VentsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000140Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 500mEnvironmentalOpen in IMG/M
3300000152Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500mEnvironmentalOpen in IMG/M
3300000157Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000mEnvironmentalOpen in IMG/M
3300000219Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 1000mEnvironmentalOpen in IMG/M
3300000222Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500mEnvironmentalOpen in IMG/M
3300000247Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500mEnvironmentalOpen in IMG/M
3300000248Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500mEnvironmentalOpen in IMG/M
3300000258Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_09_P20_1000EnvironmentalOpen in IMG/M
3300000260Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_500EnvironmentalOpen in IMG/M
3300000323Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000mEnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300001940Marine microbial communities from Bay of Fundy, Nova Scotia, Canada - GS006EnvironmentalOpen in IMG/M
3300003269Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20EnvironmentalOpen in IMG/M
3300003514Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS821_Marshmallow_DNAEnvironmentalOpen in IMG/M
3300003537Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNAEnvironmentalOpen in IMG/M
3300004280Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100mEnvironmentalOpen in IMG/M
3300005402Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73EnvironmentalOpen in IMG/M
3300005431Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75EnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300006012Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_AEnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006313Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770mEnvironmentalOpen in IMG/M
3300006326Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770mEnvironmentalOpen in IMG/M
3300006335Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006339Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006341Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770mEnvironmentalOpen in IMG/M
3300006414Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0500mEnvironmentalOpen in IMG/M
3300006567Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0770mEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007291Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_AEnvironmentalOpen in IMG/M
3300007715Estuarine microbial communities from the Columbia River estuary - metaG S.751EnvironmentalOpen in IMG/M
3300007771Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300020263Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX555942-ERR599125)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020389Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)EnvironmentalOpen in IMG/M
3300020399Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)EnvironmentalOpen in IMG/M
3300020447Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)EnvironmentalOpen in IMG/M
3300020458Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)EnvironmentalOpen in IMG/M
3300021065Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300021352Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015EnvironmentalOpen in IMG/M
3300021359Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300026213Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)EnvironmentalOpen in IMG/M
3300027553Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027700Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300028190Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000mEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300031861Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416EnvironmentalOpen in IMG/M
3300031886Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416EnvironmentalOpen in IMG/M
3300032019Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPfeb09P26500mDRAFT_101840733300000140MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK*
LPjun08P12500mDRAFT_104229223300000152MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNHPKYIKKDKNK*
LPaug08P261000mDRAFT_100119743300000157MarineMKDKIISNLISGNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
LPfeb10P161000mDRAFT_100558653300000219MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVXSXDIKTKPIWRDDPNWPKYIKDKNK*
LPjun09P12500mDRAFT_100250043300000222MarineMNSKIISNLISGRPWTYQEFWDALPDVVXSTDIEEKAVWRDANYHPKYIKDKK*
LPaug09P26500mDRAFT_100917143300000247MarineMNSKIISNLISGRPWTYQEFWDALPDVVYSTDXEEKAVWRDANYHPKYIKDKK*
LPfeb09P12500mDRAFT_100283533300000248MarineMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
LP_J_09_P20_1000DRAFT_102800123300000258MarineMKSKIISNLISNRPWTYQEFWDALPDVVHSTDIKTKPIWRDDPNWPKYIKD
LP_A_09_P20_500DRAFT_100152143300000260MarineMNSKIISNLISGRPWTYQEFWDALPDVVYSTDAEEKAVWRDANYHPKYIKDKK*
LPaug09P202000mDRAFT_101734413300000323MarineKSKIISNLISNNPWTYQEFWDALPDVVHSEDIKTKPIWRDDPNWPKYIKDKNK*
GBIDBA_1001204293300001683Hydrothermal Vent PlumeMNNMKNKIITRLISGRKWEPEEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKK*
GBIDBA_1001375853300001683Hydrothermal Vent PlumeMNSKIISNLISGRPWTYEEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
GOS2222_101326523300001940MarineMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDPNNPKYIKDKR*
JGI26112J46591_102476433300003269MarineMSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR*
FS821DNA_104516323300003514Diffuse Hydrothermal Flow Volcanic VentMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
FS903DNA_120869223300003537Diffuse Hydrothermal Flow Volcanic VentMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
Ga0066606_1003626823300004280MarineMNSKIISNLISGRPWTYEEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK*
Ga0066855_1009018023300005402MarineMKSKIISRLISGKQWKPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKK*
Ga0066855_1013038723300005402MarineMKSKIISRLISGKPWKENEFWDSLPDVVHSEDIKTKAIWRNDPNHPKYIEDKNK*
Ga0066855_1026206133300005402MarineRLISGRKWETQEFWDQLPDVVHSKDIKTKAVWRNDRNHPIYIKDKNK*
Ga0066854_1025791813300005431MarineRLISGKGWKPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKK*
Ga0066369_1027950923300005969MarineMNDMKNKIITRLISGKGWKPGEFWDQLPDVVHSEDIKTKPIWRNDPNHPIYIEDKNK*VKQ*YLML*
Ga0066374_1005436313300006012MarineMSDMKSKIITRLISGRKWEPGEFWDQLPDVVHSRDIKTKAIWRNDKNHPIYIKDTNK*
Ga0068471_106140623300006310MarineMKKSKIISRLISGKPWKENEFWDSLPDVVHSSDIKTKAIWRNDKNHPIYIEDNNKK*
Ga0068471_160403423300006310MarineMNDMKIKIMSRLISGKKLTNEEFFDSLPDVIHSKDIKTKAIWRNDKNHPTYIKDTNK*
Ga0068472_1076106623300006313MarineMSDMKSKIISNLISNRPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK*
Ga0068477_150506123300006326MarineMSDMKSKIISKLISNKPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNHPKYIKDKNK*
Ga0068480_148425223300006335MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVHSEDIKTKPIWRDDPNWPKYIKDKNK*
Ga0068480_165602423300006335MarineMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSRDIKTKAIWRNDKNHPIYIKKDKNK*
Ga0068502_151082423300006336MarineMSDMNSKIMSNLISGKPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK*
Ga0068481_137837733300006339MarineMSDMKDKIISNLISGNPWIYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
Ga0068481_157682523300006339MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKR*
Ga0068481_157683423300006339MarineMKSKIIARLISGKGWEPGEFWDQLPDVVHSKDIKTKAIWRNDPNHPIYIKDTNK*
Ga0068481_157684023300006339MarineMSDMNSKIMSNLISGKPWTYQEFWDALPDVVYSTDVEEKAVWRDANYHPKYIKDKK*
Ga0068503_10261773133300006340MarineMSDMKDKIISNLISGNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
Ga0068503_1043261833300006340MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKAIWRNDKNHPIYIKKDKNK*
Ga0068503_1077828613300006340MarineLIQYSINMSDMNSKIMSNLISGKPWTYQEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
Ga0068493_1023845623300006341MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
Ga0099957_112884423300006414MarineMSDMKTKIMARLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDKNHPIYIKDTNK*
Ga0099957_117583433300006414MarineMSDMKSKIISNLISGNPWTYQEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
Ga0099958_108131923300006567MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNHPKYIKKDNNK*
Ga0066376_1022569123300006900MarineMNDMKSKIITRLISGKGWKPGEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKR*
Ga0066372_1060091523300006902MarineMASGENMSDRRKKDDMKTKIMSRLIAGKQLTHEEFWDSLPDVVHSTDIEEKAVWRDDKNHPKYIKDKR*
Ga0066367_105553933300007291MarineMNDMKSKIITRLISGKGWEPGEFWDQLPDVVHSKDIKTKAVWRNDKNNPIYIKDTNK*
Ga0102827_114459113300007715EstuarineMSDMKTKIMSKLISGKTQTYKEFFDSLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR*
Ga0105700_129783523300007771Diffuse Vent Fluid, Hydrothermal VentsMSDMKDKIISNLISVNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK*
Ga0102815_1054624623300009080EstuarineKIKIMSRLISGKKLTNEEFFDSLPDVVHSKDIKTKAIWRNDKNHPIYIKDTNK*
Ga0114996_1124704223300009173MarineMSKLHPMKSKIITRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRNDKNNPIYIKDKR*
Ga0114993_1021423213300009409MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDAKYHPKYIKDKR*
Ga0114993_1069977323300009409MarineMSKLPPMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRNDKNNPIYIKDKR*
Ga0114993_1124948913300009409MarineMSDMNSKIISNLISGRPWTYEEFWDALPDVVYSTDIEEKAVWRDANYHPKYIKDKK*
Ga0115007_1133891913300009441MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDDPNNPKYIKDKR*
Ga0115011_1026012023300009593MarineMSDMKTKIMSRLISGKKLTNEEFWDSLPDVVHSTDIEEKAVWRDDKNHPKYIKDKR*
Ga0098059_123658523300010153MarineMSDMKTKIMSRLISGKKLTHKEFFNSLPDVVHSADIEEKAVWRDDKNNPIYIKDKR*
Ga0211679_101016923300020263MarineMSDMKSKIITRLISGKGWEPGEFWDQLPDVVHSEDIKTKPIWRDDPNHPIYIKDTNK
Ga0211504_102099823300020347MarineMSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0211680_1002612723300020389MarineMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDKNHPIYIKDTNK
Ga0211680_1009187743300020389MarineMMNDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTEAEEKAVWRDDPNHPIYIKDKNKNE
Ga0211680_1019633223300020389MarineMKSKIISRLISGKPWKENEFWDQLPDVVYSKDISTRAVWRDDPNHPKYIKKWDKK
Ga0211680_1030790613300020389MarineLIQYLINMNDMKSKIITRLISGKGWKPGEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKR
Ga0211623_1004343543300020399MarineMKKSKIISRLISGKPWKENEFWDSLPDVVHSSDIKTKAIWRNDKNHPIYIEDNNKK
Ga0211691_1020868823300020447MarineMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDKNHPIYIKDTNK
Ga0211697_1025358523300020458MarineINMSDMKSKIISRLISGKGWEPGEFWDQLPDVVHSEDIKTKPIWRDDPNHPIYIKDTNK
Ga0206686_111127023300021065SeawaterMSDMNSKIMSNLISGKPWTYQEFWDALPDVVYSTDAEEKAVWRDANYHPKYIKKD
Ga0206678_1029327523300021084SeawaterMSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206678_1031737923300021084SeawaterMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSKDIKTKAIWRNDKNHPIYIKDTNK
Ga0206679_1033433113300021089SeawaterNMSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206680_1018302213300021352SeawaterMSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNN
Ga0206680_1019893523300021352SeawaterMSDMKTKIMSRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206680_1021248823300021352SeawaterMSDMKTKIMSRLISGRKLTNEEFFDSLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206689_1103803713300021359SeawaterMSKLPPMKSKIIARLISGKGWEPGEFWDQLPDVVHSKDIKTKAIWRNDKNHPIYIK
Ga0206685_1004853223300021442SeawaterKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206685_1016448223300021442SeawaterMSKLHPMKSKIISRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0206685_1033662423300021442SeawaterIQYLINMSDMNSKIISNLISGRPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK
Ga0206681_1034760423300021443SeawaterMSDMNSKIMSNLISGKPWTYQEFWDALPDVVYSTDAEEKAVWRDANYHPKYIKKDK
Ga0208131_110227513300026213MarineMNDMKSKIISRLISGKPWKENEFWDSLPDVVHSEDIKTKAIWRNDPNHPKYIEDKNK
Ga0208947_114910623300027553MarineMSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKN
Ga0209554_110783523300027685MarineMNDMKSKIITRLISGKGWKPGEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKR
Ga0209445_109554823300027700MarineMSDMKSKIISRLISGKQWKPGEFWDQLPDVVHSTDIEEKAVWRDDPNHPKYIKDKR
Ga0209089_1029228223300027838MarineMSKLHPMKSKIITRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRNDKNNPIYIKDKR
Ga0209501_1044627623300027844MarineMSDMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDAKYHPKYIKDKR
Ga0257108_102066243300028190MarineMSDMKDKIISNLISGNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK
Ga0257108_104995423300028190MarineMKSKIITRLISGRKWEPQEFWDQLPDVVHSTEAEERAVWRDDPNHPKYIKDKR
Ga0257107_106266923300028192MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNHPKYIKKDKNK
Ga0257113_102485123300028488MarineMKSKIITRLISGRKWEPKEFWDQLPDVVHSTEAEERAVWRDDPNHPKYIKDKR
Ga0257113_107728813300028488MarineMKKNKIISRLISGKPWKENEFWDALPDVVHSTDIKTKPIWRDDPNWPKYIKDKNK
Ga0257113_117964623300028488MarineMSDMKSKIISNLISNNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDKNK
Ga0315328_1030513023300031757SeawaterMSDMKTKIMSRLISGRKLTNEEFFDSLPDVVHSTDIEEKAVWRDDKNNPIYIK
Ga0315328_1037896323300031757SeawaterTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0315331_1099335213300031774SeawaterSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0315320_1064054413300031851SeawaterRYLIDMSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDK
Ga0315319_1048227923300031861SeawaterMKKSKIISRLISGKPWKENEFWDSLPDVVHSSDIKTKAIWRGDKNHPIYIEDNNKK
Ga0315319_1063378123300031861SeawaterMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDKNHPIYIKDTNKXVKQXYRMLYGKEMLI
Ga0315318_1018160633300031886SeawaterKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDPNHPIYIKDTNK
Ga0315318_1045235323300031886SeawaterMSDMKTKIMSRLIAGKQLTHEEFWDSLPDVVHSEDIKTKAIWRDDKNHPIYIKDKNK
Ga0315318_1054513823300031886SeawaterMNDMKNKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR
Ga0315324_1009510123300032019SeawaterMSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIKTKAVWRNDKNHPIYIKDTNK
Ga0315324_1017769323300032019SeawaterMSDMKSKIITRLISGRKWEPQEFWDQLPDVVHSTDIEEKAVWRDDKNHPKYIKDKK
Ga0315324_1026170523300032019SeawaterMSDMNSKIISNLISGRPWTYQEFWDALPDVVHSTDIEEKAVWRDANYHPKYIKDKK
Ga0315327_1029491623300032032SeawaterMSKLPPMKSKIIARLISGKGWEPGEFWDQLPDVVHSTDIKTKAIWRNDKNDPIYIKDTNK
Ga0315327_1064840223300032032SeawaterMKKSKIISRLISGKPWKENEFWDSLPDVVHSSDIKTKAIWRDDKNHPIYIEDNNKK
Ga0315329_1045142213300032048SeawaterMSKLHPMKSKIIARLISGKGWEPGEFWDQLPDVVHSRDIKTKAVWRNDKNHPIYIKDTNK
Ga0315329_1070861123300032048SeawaterKSKIVSRLISGKPQTYEEFWDSLPDVVHSKDIKTKAIWRNDRNHPIYIKDKNK
Ga0315329_1075159723300032048SeawaterMSDMNSKIMSNLISGKPWTYQEFWDALPDVVYSTDAEEKAVWRDAKYHPKYIKNKR
Ga0310345_1074302613300032278SeawaterPMKSKIIARLISGKGWEPGEFWDQLPDVVHSKDIKTKAIWRNDPNHPIYIKDTNK
Ga0315334_1024945833300032360SeawaterMSDMKDKIISNLISGNPWTYQEFWDALPDVVYSKDIKTKPIWRDDPNWPKYIKDTNK
Ga0315334_1064017733300032360SeawaterMKSKIISRLISGKPWKENEFWDSLPDVVHSEDIKTKAIWRNDPNHPKYIEDKNK
Ga0315334_1137154023300032360SeawaterIISKLISNNPWTYQEFWDSLPDVVHSEDIKTKAIWRDDKNHPIYIEDKNK
Ga0310342_10315995323300032820SeawaterMSDMNSKIISNLISGRPWTYQEFWDALPDVVYSTDIEEKAVWRDAKYHPKYIKDKK


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