Basic Information | |
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Family ID | F087170 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 110 |
Average Sequence Length | 52 residues |
Representative Sequence | VSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETILWRFA |
Number of Associated Samples | 96 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 31.19 % |
% of genes near scaffold ends (potentially truncated) | 92.73 % |
% of genes from short scaffolds (< 2000 bps) | 94.55 % |
Associated GOLD sequencing projects | 94 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (98.182 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.636 % of family members) |
Environment Ontology (ENVO) | Unclassified (20.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.545 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.36% β-sheet: 0.00% Coil/Unstructured: 75.64% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Hot Spring Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Switchgrass Rhizosphere Soil Agricultural Soil Soil Grasslands Soil Hardwood Forest Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Groundwater Sand Avena Fatua Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1025893582 | 3300000955 | Soil | LKKNALSYCRPTGQLTPTSAALSYASIDLAVLEYRARRGEIILLYADETVL* |
JGI12356J13136_100921 | 3300001034 | Soil | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFALPRA |
JGI25405J52794_101168861 | 3300003911 | Tabebuia Heterophylla Rhizosphere | VLSFYRPTGRLAPAPAALAYASVELAALEYQARRGEIILLYADETIL |
Ga0066396_100456932 | 3300004267 | Tropical Forest Soil | LSYCRPTGRLDPEPADLAYGSVALAALEYQARQGDIILLYADET |
Ga0062592_1012083732 | 3300004480 | Soil | LSYSRPTGRLEPDPTELALARLDLSLLHERTRLGEIILLYEDETVLWRFALPRRGWWRRGRRY |
Ga0066395_108776252 | 3300004633 | Tropical Forest Soil | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILW |
Ga0065705_101469611 | 3300005294 | Switchgrass Rhizosphere | VLNVGARCLKKKKVSSYRPTGRLDPTPADLAYGSLELAALEYQARRGEIILLYED |
Ga0066388_1041213201 | 3300005332 | Tropical Forest Soil | VSFYRPTGQLAPDPAALAYASVDLAALEYQAHRGEIILLYADETILWPGLPPIP* |
Ga0066388_1044562592 | 3300005332 | Tropical Forest Soil | LSAESYYRPTGRLDPAPADLAYGSLELAALEYRARRGEIILLYE |
Ga0070708_1017707371 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | VSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETILWRF |
Ga0066689_102213071 | 3300005447 | Soil | VKNNTVSSCRPPGRLDPTPADLAYGSLDLAALEYRARRGEIIVLYEDATILWRFALPRLGWWRRAQ |
Ga0070706_1012405502 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VSFYRFTGRLDPVPADLASGSRELAALEYQARRGEIILLYEDDTILWRFAL |
Ga0070707_1016956071 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | VKKNDVSSSRPTGRLAPAPAALAWASLALAALEYRARRGEMIVLYDDETIVWRFALPR |
Ga0066697_103895521 | 3300005540 | Soil | LDPAPADLAYGSLELAALEYQARRGEIILLYEDETILW |
Ga0066701_102543293 | 3300005552 | Soil | VKKNTVSSCRPPGRLDPTPADLASGSLDLAALEYRARRGEIIVLDEDATILWRFALPRWGWWRRA |
Ga0066692_102616573 | 3300005555 | Soil | VSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETILWRFA |
Ga0066698_106801151 | 3300005558 | Soil | VSFYRPTGLLAPDPAALAYASVELAALEYQARRGEILLLYADETILWRFA |
Ga0066699_101407485 | 3300005561 | Soil | VKKNTLSYCRPTGRLDPTPADLAYGSLDLAALEYRARRGEIIVLYEDATILWRFALPR |
Ga0066703_100368482 | 3300005568 | Soil | VKKSLSYYRPTGQLTPAPAALAYGSVALAALEYQARRGEIILLYEDETILALPRFW* |
Ga0066708_103298661 | 3300005576 | Soil | VKKNTRSSCRPTGRLDPNPADLAYGSLELAALEYQARRGEIILLYEDETILWRFALPRAGWWRKV* |
Ga0066905_1010832782 | 3300005713 | Tropical Forest Soil | VSFYRPTGLLTPAPAALAYASVELAALEYQARRGE |
Ga0074051_112270671 | 3300006572 | Soil | VKKKDGSSSRPTGRLTPKPAELAWASLELAALESQARRGEIILLDEDETILWRFALPRAGWWRKA |
Ga0079220_104207943 | 3300006806 | Agricultural Soil | LSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETVLWRFA |
Ga0075421_1014637331 | 3300006845 | Populus Rhizosphere | VSFYRPTGRLDPAPADLAYGALALAAREYQARRGEIILLYEDE |
Ga0075421_1028119272 | 3300006845 | Populus Rhizosphere | LSYCRPTGRLDPNPADLAYGRLELEALEYWARQDEIILLYQDETVLWRFALPRRGWWRRSQRYRLPTRPL |
Ga0075430_1008179901 | 3300006846 | Populus Rhizosphere | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFALPRAGWWRKAQR |
Ga0073934_103120441 | 3300006865 | Hot Spring Sediment | LSYCRPTGRLEPNPADLAYASLALAALEYRARQGAIILLYEDETILWRFALPRRGW |
Ga0075434_1001713671 | 3300006871 | Populus Rhizosphere | LDPNPAALASGSLALAALESQARRGEIIVLSEDDTILWRFALPRA |
Ga0075429_1010929831 | 3300006880 | Populus Rhizosphere | LSYCRPTGWLDPTPANLASGSIDLAALEYRARRGEIILFYEDETILWRFALPRLGWWRR |
Ga0079216_109688791 | 3300006918 | Agricultural Soil | LTYCHPTGRLDPNPADLAYGSIALAALEYRARRGEIIVLYEDETTLWR |
Ga0075419_103985603 | 3300006969 | Populus Rhizosphere | LSYVRPTGRLHPNPADLAYGRLELAALEHWSKQEQIILLYEDETVLWRFALPRRGWWRRSHR |
Ga0099827_105173191 | 3300009090 | Vadose Zone Soil | VKKKDVSSSRPTGRLAPAPAELAWGSVELAALEYRARRGEIILLYEDETILWRFAL |
Ga0111539_100973171 | 3300009094 | Populus Rhizosphere | LKKKALTYCRPTGRLDPNPADLASGSIDLAALEYRARRGEIILLYEDDTVLWRFALPRLGWWRRA |
Ga0111539_112396761 | 3300009094 | Populus Rhizosphere | VSFYRPTGRLDPAPADLAYGSLALAALEYQARRGEIILLYEDETILW |
Ga0075418_118456331 | 3300009100 | Populus Rhizosphere | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDDTVLWRFALPRLGWWRRA |
Ga0114129_104269071 | 3300009147 | Populus Rhizosphere | VSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIILLYADETI |
Ga0114129_106667442 | 3300009147 | Populus Rhizosphere | LDPAPADLAYGSLALAAREYQARRGEIIVLYEDETILWRFALPRAGW* |
Ga0111538_112786102 | 3300009156 | Populus Rhizosphere | VSFYRPTGRLDPAPADLAYGSLALAALEYQARRGEIILLYEDETILWRFALPRAG |
Ga0126374_108934401 | 3300009792 | Tropical Forest Soil | LSFYRPTGRLDPAPADLAYGALELAALEYQARRGEIIL |
Ga0105088_10258711 | 3300009810 | Groundwater Sand | VKKTPRRSCRPTGRRDPTPADLAYGALDLAARADQARRGESIGLYADATILWRCALPRAGWWRTAQ |
Ga0105058_11598102 | 3300009837 | Groundwater Sand | VKKNHVSSDRPTGRLDPAPAELAYGSLDLAALESQARRGEILVLSED |
Ga0126384_116513471 | 3300010046 | Tropical Forest Soil | LSYCRPTGRLDPNPADLAQASLELAALEDRARRGEIIFLYEEETVLWRFALPRVGW |
Ga0126384_118675751 | 3300010046 | Tropical Forest Soil | VKKNVWSFYRPTGRLDPAPADLAYGALELAALEYQARRGEIILLYTDETILWRFALL |
Ga0126382_101989341 | 3300010047 | Tropical Forest Soil | LKKNAVSFYRPTGRLEPAPADLAYGSLELAALEYQARRGEIILLYEDETI |
Ga0126382_108267682 | 3300010047 | Tropical Forest Soil | VSFYRPTGRLEPDPAALSYGSLELAALEYRARRGEIILL* |
Ga0126382_111833171 | 3300010047 | Tropical Forest Soil | VSYYRPTGRLDPAPADLASGSLELAALEYQARQGKIILLYEDET |
Ga0126382_121052141 | 3300010047 | Tropical Forest Soil | VSYYRPTGRLDPHPADLAYGALELAALEYQARRGEIIVLYEDATILWRLALPRA |
Ga0127456_10622782 | 3300010140 | Grasslands Soil | VLKKNTLSYCRPTGRLDPTPADLAYGSLELAALEYRARRGDIILLYEDET |
Ga0134086_101436411 | 3300010323 | Grasslands Soil | VKNNTVSSCRPPGRLDPTPADLAYGSLDLAALEYRARRGEIIVLYEDATILWRFALPRWGKAPEDRCIFVEHND |
Ga0134065_102214352 | 3300010326 | Grasslands Soil | VKNNTVSSCRPPGRLDPTPADLAYGSLDLAALEYRARRGEIIVLYEDATILWRFALPRW |
Ga0134111_103727061 | 3300010329 | Grasslands Soil | VKKHTVSSCRPPGRLDPTPADLAYGSLDLAALEYRARRGEIIVLYEDAPILWRFALPR |
Ga0126376_105029533 | 3300010359 | Tropical Forest Soil | SRPTGRLEPTPAEFASGSLALAALESQARRGEIRGL* |
Ga0126376_122108392 | 3300010359 | Tropical Forest Soil | VSFYRPTGRLDPTPADLAYGSLELAALEYRARRGE |
Ga0126372_111436641 | 3300010360 | Tropical Forest Soil | LLSYCRPTGRLDPNPADLAYGRLELEALEYWARQGEIILLYQDETVLWRFALPRRGWWRRRQ |
Ga0126377_110591161 | 3300010362 | Tropical Forest Soil | LDGSFKKKEVSSYRPTGRLDPNPADLAYGALELAALEYQARRGEIILLYEDETIL |
Ga0126377_111266583 | 3300010362 | Tropical Forest Soil | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFALPRAGWWRK |
Ga0126379_116836641 | 3300010366 | Tropical Forest Soil | VSFYRPTGRLDPAPAALAYGSLELAALEYQARRGEIILLYA |
Ga0126379_129387552 | 3300010366 | Tropical Forest Soil | VKCEKKRVSYSRPTGRLAPDPAELAWASLELAALEYRARWGEIILLYEDETVLWRF |
Ga0134128_126744491 | 3300010373 | Terrestrial Soil | LDPAPADLAYGSLELAALEYQARRGEIILLYEDETIL |
Ga0137364_105604723 | 3300012198 | Vadose Zone Soil | VKKNTLSSCRPTGRLDPTPADLAYGSLELAALEYRARRGEIILLYEDETILWRFAMLRAGWWRRAQRARLPT |
Ga0137383_107925712 | 3300012199 | Vadose Zone Soil | VSYYRPTGRLDPDPAAFAYGSLALAALEYRARRGEIILLYED |
Ga0137380_103408314 | 3300012206 | Vadose Zone Soil | VSYYRPTGRLDPDPAAFAYGSLALAALEYRARRGEIILLYEDDTILWRFALPRAGWWR |
Ga0137380_113142692 | 3300012206 | Vadose Zone Soil | VKNNTVSYCRPPGRLDPTPADLASGSIDLAALEYRARRGEIIVLYEDE |
Ga0137379_115088571 | 3300012209 | Vadose Zone Soil | VKKNTISYCRPTGRLDPTPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFA |
Ga0137378_104752714 | 3300012210 | Vadose Zone Soil | MKKNEVSYYRPTGRLDPTPAALAYGSLELAALEYQARRGEIILLYEDETILWRFALP |
Ga0150985_1038431931 | 3300012212 | Avena Fatua Rhizosphere | MKKKARSSSRPTGRLAPNPAARAWASVALAALEDRARRGELIGLSADATLLWRFALP |
Ga0137387_108590451 | 3300012349 | Vadose Zone Soil | VKKNTLSYCRPTGRLDPNPADLAYGSLELAALEYRARRGEIILLYEDETILWRFAMLRAGWWRR |
Ga0137384_108525381 | 3300012357 | Vadose Zone Soil | VKKKDVSYYRPTGRLDPHPADLAYGSLALAALEYRARRDEIIVLYEDETILWRFALPR |
Ga0137361_105942571 | 3300012362 | Vadose Zone Soil | LTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRFAMLRA |
Ga0137396_107610991 | 3300012918 | Vadose Zone Soil | VECEKKQVSSYRPTGRLDPNPADLAYGALELAALESQARRGEIILLSEDETILWRFALPRAG |
Ga0137407_104028661 | 3300012930 | Vadose Zone Soil | VKKNTLSSCRPTGRLDPTPADLAYGSLELAALEYRARRGEIILLYEDE |
Ga0126375_110702762 | 3300012948 | Tropical Forest Soil | VSFYRPTGRLDPAPAELAYGALELAALEYQARRGEITLLYEDETILWRFA |
Ga0134110_104050741 | 3300012975 | Grasslands Soil | RPPGRLAPDPAALAWASLDLAALESRARRGESIGR* |
Ga0134078_103253051 | 3300014157 | Grasslands Soil | LSFYRPTGRLAPAPADLAYGSLELAALEYQARRGEIILLYADETILWRFAL |
Ga0182001_101677461 | 3300014488 | Soil | LSYLRPTGRLAPHPADLAYGRLELAALEYWASQDRIILLYEDETVLWRFALSRRGW* |
Ga0066655_101768182 | 3300018431 | Grasslands Soil | LKKKDVSSYRPTGRLDPAPADLAYGSLELAALEYQARHGEIIVLYADETI |
Ga0066655_104418341 | 3300018431 | Grasslands Soil | VKKNTLSSCRPTGRLDPTPADLAYGSLDLAALEYRARRGEIIVLDENATILWRFALPRWG |
Ga0184646_13728011 | 3300019259 | Groundwater Sediment | VKKNTLSYCRPTGRLNPNPADLAYGSLALAALEYQARRGEIILLYEDETILW |
Ga0210382_103344971 | 3300021080 | Groundwater Sediment | VKKKDGSSSRPTGRLAPQPAALAWAALALAALESRARRGEIILLDEDETILWRFALPRAGWW |
Ga0222625_12977521 | 3300022195 | Groundwater Sediment | MKKNTGSSCRPTGRLDPTPADLASGSVDLAALASRARRGEIIWLYEDETIL |
Ga0179589_102852221 | 3300024288 | Vadose Zone Soil | VSFYRPTGRLDPAPADLAYGSLALAALEYQARRGEINVLYEDE |
Ga0207698_118280201 | 3300026142 | Corn Rhizosphere | VSAACEKKDLSYYRPTGRLEPDLAALAYASIDLAALAYQARRGEIILLYEDETVLW |
Ga0209239_12986272 | 3300026310 | Grasslands Soil | VKKNTLSSCRPTGRLDPTPADLAYGSLDLAALEYRARRGEIIVLDEDETILWRFALPR |
Ga0209474_104418471 | 3300026550 | Soil | LDPAPADLAYGSLELAALEYQARRGEIILLYEDETI |
Ga0208581_1039542 | 3300026704 | Soil | VSFSRPTGRLEPAPADLAYGSLELAALEYQARRGEIILLYEDETILWRFA |
Ga0207428_111476272 | 3300027907 | Populus Rhizosphere | LTYCRPTGRLDPNPADLASGSIDLAALEYRARRGEIILLYEDETILWRFALPRAGW |
Ga0209382_111703273 | 3300027909 | Populus Rhizosphere | LDPNPADLAYGSLELAALEYQARRGEIILLYEDETILWRF |
Ga0209382_113489012 | 3300027909 | Populus Rhizosphere | VSFYRPTGRLDPAPADLAYGALALAAREYQARRGEI |
Ga0307281_102482073 | 3300028803 | Soil | VKKNTLSSCRPTGRLDPTPADLAYGSLDLAALESRARRGESIVLYEDEPILWRFA |
Ga0247824_108933871 | 3300028809 | Soil | VSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIILL |
Ga0247827_111055622 | 3300028889 | Soil | VSFYRPTGRLEPAPADLAYGSLELAALEYQARRGEIIV |
Ga0268258_101154781 | 3300030502 | Agave | LSYCRPTGRLDPNPADLAYGRLELEALEYGARQDEIILLYQDETVLWRFALPR |
Ga0308190_10439803 | 3300030993 | Soil | MKKNTCRSCRPTGRLDPTPADLAYGSVDLAALAYRARRGEIILLYEDETILRRFALPRLGWWRRAQRPRL |
Ga0308189_102639212 | 3300031058 | Soil | VKKKDGSSSRPTGRLDPAPADLAYASLELAALESRARRGEIILLYEDETILWRFALPRA |
Ga0308187_104608241 | 3300031114 | Soil | MKKNTGSYCRPTGRLDPTPADLAYGSVDLAALASRARRGEIILLYEDETI |
Ga0308182_10034881 | 3300031125 | Soil | MKKNTGSSCRPTGRLDPTPADLASGSVDLAALASRARRGEIIWLYEDETILWRFALPRLGWWRRAQRP |
Ga0307497_103938121 | 3300031226 | Soil | VKKNWLSSCRPTGRLDPNPADLAYGRLELEALKYWARQGESILLYQDETVLWRLALPR |
Ga0310907_103810661 | 3300031847 | Soil | LSYSRPTGRLEPDPTELALARLDLFLLHERTRLGEIILLYEDETVLWRFALPRRGWWRRGRRYRLPLR |
Ga0310904_105755331 | 3300031854 | Soil | LSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETVLW |
Ga0310901_100175732 | 3300031940 | Soil | LKKNALTYCRPTGRLDPNPADLAYGSIDLAALEYRARRGEIILLYEDETILWRF |
Ga0310885_107606892 | 3300031943 | Soil | VSFYRPTGRLEPAPADLAYGSLELAALEYQARRGEIILLYEDETI |
Ga0307471_1029437382 | 3300032180 | Hardwood Forest Soil | VSFYRPTGRLDPAPAALAYGALELAALEYPARRGEIIVLSEDE |
Ga0307472_1019096272 | 3300032205 | Hardwood Forest Soil | VKKNTLSYCRPTGRLDPTPADLAYGSLELAALEYRARRGDIILLYEDETILWRFA |
Ga0314789_014140_3_116 | 3300034480 | Soil | MSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIIL |
Ga0314780_021804_2_166 | 3300034659 | Soil | MSFYRPTGRLAPDPAALAYASVELAALEYHARRGEILLLYADETIVWRFALPRAG |
Ga0314784_120048_439_567 | 3300034663 | Soil | MSFYRPTGRLDPTPADLAYGSLELAALEYQARRGEIILLYEDE |
Ga0314792_143734_3_161 | 3300034667 | Soil | LSFYRPTGRLDPAPADLAYGSLELAALEYQARRGEIILLYEDETVLWRFALPR |
Ga0314795_073425_1_135 | 3300034670 | Soil | MSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIILLYADETI |
Ga0314796_054314_1_165 | 3300034671 | Soil | MSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIILLYADETIVWRFALPRAG |
Ga0314797_050751_3_134 | 3300034672 | Soil | MSFYRPTGRLAPDPAALAYASVELAALEYQARRGEIILLYADET |
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