Basic Information | |
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Family ID | F080313 |
Family Type | Metagenome |
Number of Sequences | 115 |
Average Sequence Length | 44 residues |
Representative Sequence | MAERPVIVIVDDEPDALAAMLDALTRRFGGDYRVVPHLSARA |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 98.26 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 93.04 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.61 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (63.478 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (22.609 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.652 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (31.304 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 21.43% β-sheet: 17.14% Coil/Unstructured: 61.43% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.61 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Groundwater Sediment Freshwater Lake Sediment Freshwater Wetlands Sediment Natural And Restored Wetlands Wetland Soil Watersheds Mangrove Sediment Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Deep Subsurface Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Hydrocarbon Resource Environments |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A001DRAFT_101145222 | 3300000793 | Forest Soil | MAERAQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALAGVRKSKEENEDIALVIANQ |
JGI10216J12902_1226388144 | 3300000956 | Soil | VRIYPRPAIVIVDDEPSQLAAMLDALVRRFGGDYRIVPHLSGNAALE |
TOLCLC_102579082 | 3300002498 | Hydrocarbon Resource Environments | MLDRPTIMVVDDEPTALASMLDALTRRFGGDYRIEPHLSPP |
JGI20214J51650_101334231 | 3300003541 | Wetland | MAERPLILIVDDEPTALASMLDALMRRFGGDYRVEPHLSARSALDAVSRHKADGEE |
Ga0062594_1016970001 | 3300005093 | Soil | MEGDASVEEKPVIVAVDDETDELSTMRDALTRRFATDYRIA |
Ga0070682_1002598103 | 3300005337 | Corn Rhizosphere | MVERPAIVIVDDQPDALTAMLDALTRRFGTDYRVVPHLSPSAALKAI |
Ga0068868_1013940041 | 3300005338 | Miscanthus Rhizosphere | MAERPVILVVDDEPDALSTMVDALSRRFGRDYRVIPHLSARAALDAA |
Ga0068868_1016712431 | 3300005338 | Miscanthus Rhizosphere | VEERPVIVAVDDETDALSTMRDALTRRFATDYRIASHLSARAALD |
Ga0070661_1004532172 | 3300005344 | Corn Rhizosphere | VEEKPVIVAVDDETDELSTMRDALTRRFATDYRIASHLSARAALDEVCA |
Ga0070713_1003478523 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MAERPIIAVVDDEPDALAAMLDALSRRFGGDYRVIAHSSARAALEAITKI |
Ga0070711_1013537212 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VDERPVIVAVDDESDALSTMLDALTRRFATDYRIASHLSARAALDEVCAIKEKGGEI |
Ga0070679_1009171463 | 3300005530 | Corn Rhizosphere | MTERPAIIIVDDQPDALAAMLDALTRRFGTDYRVIPHLSPPAALASIAKIKEE |
Ga0070695_1016810132 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MAERALIIVVDDESDALAAMLDALTRRFGADYRVVPYLSSCAALAGVRKSKEENEEIAL |
Ga0068859_1021959521 | 3300005617 | Switchgrass Rhizosphere | VEERPVIVAVDDETDALSTMRDALTRRFATDYRIASHLSARAALDEVCA |
Ga0066903_1089915741 | 3300005764 | Tropical Forest Soil | MAERALIIVVDNESDALAAMLDALSRRFGADYRVVPYPSSCAALAGVRKSKEENEEIALVIAA |
Ga0068858_1019380671 | 3300005842 | Switchgrass Rhizosphere | MAERPVIMVVDDEPAALAAILDALTRRFGGDYRIV |
Ga0075017_1009318532 | 3300006059 | Watersheds | MAERASIIVVDDESDALAAMLDALTRRFGADYRVVPYLSPGSAL |
Ga0075019_110433633 | 3300006086 | Watersheds | VDDRPVIVVVDDEADALSAILHTLTRRFGGDYRVVSHRSARTALDDI |
Ga0070712_1005533111 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VDERPVIVAVDDESDALSTMLDALTRRFATDYRIASHLSARA |
Ga0079037_1002146464 | 3300006224 | Freshwater Wetlands | MPERPTILVVDDEPAALASMLDALTRRFGGDYRVEP |
Ga0079037_1026270852 | 3300006224 | Freshwater Wetlands | MEEILNGRPNIIVVDDEPSSLASLLDALTRRYGGDY |
Ga0075436_1015242621 | 3300006914 | Populus Rhizosphere | MAERPIIAVVDDEPDALAAMLDALSRRFGGDYRVIAHSSARAALEAITKIKE |
Ga0079303_101585761 | 3300006930 | Deep Subsurface | MAERPLILIVDDEPTALASMLDALTRRFGGDYRVEPHLSAHSALD |
Ga0079303_103391551 | 3300006930 | Deep Subsurface | MNARPNIIVVDDEPAALASLLDALTRRYGGDYRVI |
Ga0105095_102113581 | 3300009053 | Freshwater Sediment | MPERPTILIVDDEPAALASMLDALTRRFGGDYRIEPHLSAHTALDAVSRLKADGE |
Ga0105095_104141492 | 3300009053 | Freshwater Sediment | MLERPTILVVDDEPAALASMLDALTRRFGGDYRVEPHLSAHTALDAVSRLKADGE |
Ga0105107_107507202 | 3300009087 | Freshwater Sediment | MLERPVILVVDDEPTALASMLDALTRRFGGDYRVEPHLSAHTALDAVPRL |
Ga0102851_121039572 | 3300009091 | Freshwater Wetlands | MTARPNIIVVDDEPTALASLLDALTRRYGGDYRVIPHLSA |
Ga0115026_119300481 | 3300009111 | Wetland | VLERPTILIVDDEPTALASMLDALTRRFGGDYRVEPHLSAHSALDA |
Ga0115027_107326522 | 3300009131 | Wetland | MDGRPNIIIVDDEPTELASLLDALTRRYGGDYRVI |
Ga0105243_125345742 | 3300009148 | Miscanthus Rhizosphere | MAERALIIVVDDESDALAAMLDALTRRFGADYRVVPYLSSCAALAGVRK |
Ga0113563_121773892 | 3300009167 | Freshwater Wetlands | MNDRPNIIVVDDEPAALASLLDALTRRYSVDYRVIPHLSA |
Ga0113563_134861551 | 3300009167 | Freshwater Wetlands | MNTRPNIIVVDDEPTALASLLDALTRRYGGDYRVIPHLSALGA |
Ga0105101_106018021 | 3300009171 | Freshwater Sediment | MEEILNARPNIIVVDDEPTALASLLDALTRRYSADYR |
Ga0105242_130985621 | 3300009176 | Miscanthus Rhizosphere | VIVAVDDETDALSTMRDALTRRFATDYRIASHLSARAALDEVCAIKEKGGEIA |
Ga0123573_114890571 | 3300009509 | Mangrove Sediment | MPERPFILVVDDEPAALAAMLDALTRRFGSDYRVEPHL |
Ga0126310_108047582 | 3300010044 | Serpentine Soil | MLARPVITVVDDEPRALAGLLDALARRFGGDYRIVS |
Ga0126370_119437221 | 3300010358 | Tropical Forest Soil | MAERATIIVVDDESEILTAMLDALTRRYGADYRVVPYLSPCSAL |
Ga0126379_134214872 | 3300010366 | Tropical Forest Soil | MAERPVIMVVDDEPGALAAMLDALTRRFGADYRVVPHLSA |
Ga0126381_1046309132 | 3300010376 | Tropical Forest Soil | MAERVQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALAGV |
Ga0126383_103073853 | 3300010398 | Tropical Forest Soil | MAERAQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALAGVRKSK |
Ga0137333_10861001 | 3300011413 | Soil | MEEILNARPNIIVVDDEPIALASLLDALTRRYGGDYRVI |
Ga0137338_10732261 | 3300012174 | Soil | MNARPNIIVVDDEPAALASLLDALTRRYGGDYRVIPHLS |
Ga0126369_105908722 | 3300012971 | Tropical Forest Soil | MAERATIIVVDDESDTLAALLYALTRRYGADYRVVPYL |
Ga0164306_119797831 | 3300012988 | Soil | VIVAVDDETDALSTMRDALTRRFATDYRIASHLSARAALDEVCAIK |
Ga0157378_116126682 | 3300013297 | Miscanthus Rhizosphere | VEERPVIVAVDDETDALSTMRDALTRRFATDYRIAS |
Ga0075359_11475801 | 3300014266 | Natural And Restored Wetlands | MAERPLILIVDDEPTALASMLDALMRRFGGDYRVEPHLSARSALDAVSRHKADGEET |
Ga0180076_10655411 | 3300014867 | Soil | MEEILNARPNIIVVDDEPSSLASLRDALTRRYGGDYRVIPHLSA |
Ga0180104_11462041 | 3300014884 | Soil | MDARPNIIVVDDEPTALASLLDALTRRYSADYRVI |
Ga0132256_1015863031 | 3300015372 | Arabidopsis Rhizosphere | VDERPVIVAVDDESDALSTMLDALTRRFATDYRIASHLSARAAL |
Ga0182033_108112832 | 3300016319 | Soil | MAEIAQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALAGVRKSKEENEEIALVIA |
Ga0182032_113948403 | 3300016357 | Soil | MAERAVIIVVDDESDVLGAMLDALTRRFGADYRVVPYLSPCSALA |
Ga0182039_122714322 | 3300016422 | Soil | MDEKSAIIVVDDESDALAAIRDALTRRFGGDYRILPHASACAALEGV |
Ga0187777_100803761 | 3300017974 | Tropical Peatland | MAERPAIVVVDDEPDELAAMLDALTRRVWGDYRVVPHLSA |
Ga0187766_100144846 | 3300018058 | Tropical Peatland | MAERPAIVVVDDEPDELAAMLDALTRRFGGDYRVVPHLSARAALEAV |
Ga0187765_101066422 | 3300018060 | Tropical Peatland | MPERPVIVVVDDEPDALAAMLDALTRRFGGDYRVVPHLSARAALVAVTKMKEEKEE |
Ga0187773_102027351 | 3300018064 | Tropical Peatland | MAERPVIVVVDDEPDALSEMLDALTRRFGGDYRVVSHLSARAALDAICA |
Ga0187770_108913931 | 3300018090 | Tropical Peatland | MAERPVIVIVDDEPDALAAMLDALTRRFGGDYRVVPHLSARA |
Ga0210379_100819483 | 3300021081 | Groundwater Sediment | MEEILNARPNIIVVDDEPTALASLLDALTRRYGGDYRVIPHL |
Ga0210406_109071861 | 3300021168 | Soil | MDEKPAIIVVDDEADALAGIREALTRRFGGDYRILPHLAARTALEAVCSIKEKEE |
Ga0210405_108196632 | 3300021171 | Soil | MDEKPAIIVVDDEADALAGIREALTRRFGGDYRILPHLAARTA |
Ga0210387_114487742 | 3300021405 | Soil | MAERAAIVVVDDEPAALADMLDALTRRFGADYRVLPYLAPSTA |
Ga0210391_115380441 | 3300021433 | Soil | MAERAAIVVVDDEPAALADMLDALTRRFGADYRVLPYLGPSTALDGI |
Ga0210098_10986551 | 3300025550 | Natural And Restored Wetlands | MISRPNIIVVDDEPTALASLLDALTRRYSADYRVIPHL |
Ga0256811_10256872 | 3300026349 | Sediment | METRPLILVVDDEPAALASMLDALTRRFGGDYRIEPHLS |
Ga0209285_100599791 | 3300027726 | Freshwater Sediment | MAERPLILIVDDEPTALASMLDALTRRFGGDYRVEPHLSARSALDAV |
Ga0209397_100017647 | 3300027871 | Wetland | MHERPTILIVDDEPTALASMLDALTRRFGGDYRIEPHLSAHAALDAVSRIKADGD |
Ga0209283_100741423 | 3300027875 | Vadose Zone Soil | MAERPIIMVVDDEPDALAAMLDALARRFGGDYRVIPHLSP |
Ga0209293_105573391 | 3300027877 | Wetland | MTARPNIIVVDDEPTALASLLDALTRRYGGDYRVIPHLS |
Ga0209293_107571811 | 3300027877 | Wetland | MPERPTILVVDDEPAALASMLDALTRRFGGDYRVEPHLSPH |
Ga0209496_102557821 | 3300027890 | Wetland | VLERPTILIVDDEPTALASMLDALTRRFGGDYRVEPHLSAR |
Ga0209496_106136231 | 3300027890 | Wetland | MHERPTILIVDDEPTALASMLDALTRRFGGDYRIEPHLSAHAA |
Ga0209068_108872112 | 3300027894 | Watersheds | MAERALIIVVDDESDALAAMLDALTRRFGADYRVVPYLSPCCALAGVCKSKEENEEITLV |
Ga0209668_100721151 | 3300027899 | Freshwater Lake Sediment | MAERPLILTVDDEPTALASMLDALTRRFGGDYRVEPHLLA |
Ga0209079_102397642 | 3300027972 | Freshwater Sediment | MAERPLILIVDDEPTALASMLDALTRRFGGDYRVEPHLSARSALDA |
Ga0318573_106147862 | 3300031564 | Soil | MAERPAIVILDDDPVALSALLDALARRFGADYRVVSQL |
Ga0306917_108468731 | 3300031719 | Soil | MAERPVIMVVDDEPDALAAMLDALTRRFGGDYRVIPDLSARAALDAVAKIKEE |
Ga0307473_109994792 | 3300031820 | Hardwood Forest Soil | MLQRPVILIVDDEPRAVAELLDALARRFGADYRVIP |
Ga0310917_104000081 | 3300031833 | Soil | MAERAVIIVVDDESDVLGAMLDALTRRFGADYRVVPYLSPCSALAGVCKSKEANEEIALV |
Ga0306921_115876751 | 3300031912 | Soil | MTERPLIFIVDDESEALAGMLDALTRRFGDDYRVVPHLSARAALDAVSKSAKDRDEI |
Ga0310912_110011811 | 3300031941 | Soil | MAERPVIMVVDDEPDALAAMLDALTRRFGGDYRVIPDL |
Ga0214473_122928311 | 3300031949 | Soil | MNARPNIIVVDDEPAALASLLDALTRRYGGDYRVIPH |
Ga0318533_112700251 | 3300032059 | Soil | MVERAQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALAGVRKSK |
Ga0306924_125573241 | 3300032076 | Soil | MAERAQIIVVDDQSDALAAMLDALTRRFGADYRVVPYLSPCSALA |
Ga0318518_105537661 | 3300032090 | Soil | MAERAQIIVVDDQSDALAALLDALTRRFGADYRVVPYLSPCSALAGVRKGK |
Ga0315910_115348751 | 3300032144 | Soil | MMTRPVIALVDDDPRALTAMLDALVRRFGADYRVVS |
Ga0306920_1015786002 | 3300032261 | Soil | MAERAVIIVVDDESSVLAAMLDALTRRFGADYRVAPYLSPCSALAGVCKS |
Ga0335078_114434102 | 3300032805 | Soil | MRERPLIIVVDDESEPLAAMLEALTRRFGGDYQVVSYLSARAALDMVIKCKQENAEIA |
Ga0335080_111987561 | 3300032828 | Soil | MRERPLIIVVDDESDELAAILDALTRRFGGDYRIVPHLS |
Ga0335069_107406482 | 3300032893 | Soil | MPDRPAIVIVDDEPRALTAMLDALTRRFGADYRVAPHLSPGEALESLE |
Ga0310914_109090512 | 3300033289 | Soil | MAERAVIIIVDDESDALAAMLDALTRRFGADYRVLPYLSP |
Ga0310914_115566392 | 3300033289 | Soil | MAERAVIIIVDDESDALAAMLDILTRRFGADYRVVPYLSPCSALAGVCKSK |
Ga0316604_107484682 | 3300033406 | Soil | MNARPNIIVVDDEPAALASLLDALTRRFGGDYRVIPHLSAL |
Ga0316605_100927111 | 3300033408 | Soil | MNARPNILVVDDEPAALASLLDALTRRFGGDYRVIPHLSA |
Ga0316605_101912064 | 3300033408 | Soil | MNAHPNIIVVDDEPTALASLLDALTRRYGGDYRVIP |
Ga0316605_107849351 | 3300033408 | Soil | MEEILNARPNIIVVDDEPSSLASLLDALTRRYGGDY |
Ga0316605_114928272 | 3300033408 | Soil | VLERPTILIVDDEPTALASMLDALTRRFGGDYRVEP |
Ga0316603_100558441 | 3300033413 | Soil | MHERPTILIVDDEPTALASMLDALTRRFGGDYRIEPHLS |
Ga0316603_100875514 | 3300033413 | Soil | MPERPTILVVDDEPAALASMLDALTRRFGGDYRVEPHLSAPSALDAFS |
Ga0316603_114016253 | 3300033413 | Soil | MNAHPNIIVVDDEPTDLASLLDALTRRYGGDYRVIPHLS |
Ga0316603_121808642 | 3300033413 | Soil | MNARPIILVVEDEPAALASLLDDLTRRYGGHYRVIPHL |
Ga0316619_101407701 | 3300033414 | Soil | MHERPTILIVDDEPTALASMLDALTRRFGGDYRIEPH |
Ga0316619_105270501 | 3300033414 | Soil | MAERPLILIVDDEPTALASMLDALTRRFGGDYRVEPHLSARSALDAISRHK |
Ga0316619_105370701 | 3300033414 | Soil | MPERPTILVVDDEPAALASMLDALTRRFGGDYRVEPHLSAPSALDAVAR |
Ga0316620_103936693 | 3300033480 | Soil | VQSRPVIAVVDDEPVALAALLDALARRFGADYRVELSR |
Ga0316600_107510732 | 3300033481 | Soil | MTARPNIIVVDDEPTALASLLDALTRRYGGDYRVIP |
Ga0316627_1011348972 | 3300033482 | Soil | MPERPVILIVDDEPAALASMLDALTRRFGADYRVEPHLS |
Ga0316627_1022515741 | 3300033482 | Soil | MNARPNIIVVDDEPAALASLLDALARRYGGDYRVIPHLSAL |
Ga0316629_103236361 | 3300033483 | Soil | MTERPMILIVDDEPTALASMLDALTRRFGGDYRVEPHLSARAALDAVS |
Ga0316626_107889832 | 3300033485 | Soil | MNARPNIIVVDDEPTALASLLDALTRRYGGDYRVIPY |
Ga0316628_1013223122 | 3300033513 | Soil | MHERPTILIVDDEPTALASMLDALTRRFGGDYRIEPHLSAHAALDTVSRIKADGDEL |
Ga0316616_1006886741 | 3300033521 | Soil | MGERPLILIVDDEPTALASMLDALTRRFGGDYRVEPHLSARSALDAVSSHKAD |
Ga0316616_1011274582 | 3300033521 | Soil | MADRPVIVIVDDEPTALAGMLDALNRRFGADYRVVPY |
Ga0316616_1015382783 | 3300033521 | Soil | MNAHPNIIVVDDEPAALASLLDALTRRYGGDYRVIPH |
Ga0316616_1020954571 | 3300033521 | Soil | MNARPNIIVVDDEPAALASLLDALTRRYGGDYRVIPHLSALG |
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