Metagenome / Metatranscriptome Family F079454

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079454
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	61 residues
Representative Sequence	SRANLALTLTKLVLRTKDLNSMLLDGLEVFLGVCVMSWDSSKLQMAGGAHIYRPPSRTSR
Number of Associated Samples	84
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.27 %
% of genes near scaffold ends (potentially truncated)	93.91 %
% of genes from short scaffolds (< 2000 bps)	96.52 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (86.087 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (76.522 % of family members)
Environment Ontology (ENVO)	Unclassified (93.043 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (70.435 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.14% β-sheet: 0.00% Coil/Unstructured: 48.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF03372	Exo_endo_phos	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
All Organisms	root	All Organisms	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
cellular organisms	root	All Organisms → cellular organisms	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	13.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	12.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	11.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	11.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	11.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	11.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	10.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	10.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	6.09 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	3.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.09 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	6.09 %
Panicum miliaceum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	3.48 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005347\|Ga0070668_100965078	Not Available	764	Open in IMG/M
3300009994\|Ga0105126_1029739	Not Available	637	Open in IMG/M
3300009994\|Ga0105126_1032119	Not Available	621	Open in IMG/M
3300009995\|Ga0105139_1020579	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	982	Open in IMG/M
3300010400\|Ga0134122_11195871	Not Available	760	Open in IMG/M
3300010400\|Ga0134122_12874902	Not Available	535	Open in IMG/M
3300010401\|Ga0134121_12638711	Not Available	546	Open in IMG/M
3300015270\|Ga0182183_1069345	Not Available	558	Open in IMG/M
3300015278\|Ga0182099_1023918	Not Available	688	Open in IMG/M
3300015280\|Ga0182100_1041458	Not Available	679	Open in IMG/M
3300015290\|Ga0182105_1046073	Not Available	676	Open in IMG/M
3300015290\|Ga0182105_1052685	Not Available	648	Open in IMG/M
3300015293\|Ga0182103_1066238	Not Available	586	Open in IMG/M
3300015293\|Ga0182103_1071252	Not Available	572	Open in IMG/M
3300015297\|Ga0182104_1027241	Not Available	831	Open in IMG/M
3300015297\|Ga0182104_1061360	Not Available	640	Open in IMG/M
3300015297\|Ga0182104_1074439	Not Available	600	Open in IMG/M
3300015297\|Ga0182104_1109039	Not Available	522	Open in IMG/M
3300015297\|Ga0182104_1117146	Not Available	508	Open in IMG/M
3300015301\|Ga0182184_1024184	Not Available	809	Open in IMG/M
3300015301\|Ga0182184_1053781	Not Available	625	Open in IMG/M
3300015306\|Ga0182180_1056651	Not Available	605	Open in IMG/M
3300015311\|Ga0182182_1116890	Not Available	511	Open in IMG/M
3300015312\|Ga0182168_1052209	Not Available	722	Open in IMG/M
3300015316\|Ga0182121_1101643	Not Available	585	Open in IMG/M
3300015317\|Ga0182136_1111900	Not Available	552	Open in IMG/M
3300015318\|Ga0182181_1038450	Not Available	733	Open in IMG/M
3300015319\|Ga0182130_1047910	Not Available	732	Open in IMG/M
3300015319\|Ga0182130_1136519	Not Available	504	Open in IMG/M
3300015327\|Ga0182114_1074191	Not Available	690	Open in IMG/M
3300015327\|Ga0182114_1113532	Not Available	584	Open in IMG/M
3300015328\|Ga0182153_1107505	Not Available	578	Open in IMG/M
3300015328\|Ga0182153_1143463	Not Available	516	Open in IMG/M
3300015329\|Ga0182135_1103665	Not Available	591	Open in IMG/M
3300015330\|Ga0182152_1107429	Not Available	583	Open in IMG/M
3300015331\|Ga0182131_1004411	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1584	Open in IMG/M
3300015331\|Ga0182131_1053065	Not Available	760	Open in IMG/M
3300015331\|Ga0182131_1121978	Not Available	556	Open in IMG/M
3300015333\|Ga0182147_1114387	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	593	Open in IMG/M
3300015333\|Ga0182147_1153134	Not Available	525	Open in IMG/M
3300015335\|Ga0182116_1129952	Not Available	580	Open in IMG/M
3300015335\|Ga0182116_1142409	Not Available	558	Open in IMG/M
3300015337\|Ga0182151_1083692	Not Available	661	Open in IMG/M
3300015339\|Ga0182149_1109653	Not Available	611	Open in IMG/M
3300015340\|Ga0182133_1094670	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	679	Open in IMG/M
3300015350\|Ga0182163_1248677	Not Available	557	Open in IMG/M
3300015352\|Ga0182169_1170026	Not Available	712	Open in IMG/M
3300015352\|Ga0182169_1179900	Not Available	691	Open in IMG/M
3300015353\|Ga0182179_1288537	Not Available	533	Open in IMG/M
3300015354\|Ga0182167_1182066	Not Available	772	Open in IMG/M
3300017408\|Ga0182197_1070325	Not Available	673	Open in IMG/M
3300017412\|Ga0182199_1120405	Not Available	620	Open in IMG/M
3300017422\|Ga0182201_1034310	Not Available	814	Open in IMG/M
3300017432\|Ga0182196_1019087	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1014	Open in IMG/M
3300017439\|Ga0182200_1092726	Not Available	616	Open in IMG/M
3300017445\|Ga0182198_1015016	Not Available	1248	Open in IMG/M
3300017445\|Ga0182198_1107802	Not Available	643	Open in IMG/M
3300017445\|Ga0182198_1107802	Not Available	643	Open in IMG/M
3300017445\|Ga0182198_1142066	Not Available	580	Open in IMG/M
3300017445\|Ga0182198_1163932	Not Available	548	Open in IMG/M
3300017446\|Ga0182217_1093058	Not Available	706	Open in IMG/M
3300017446\|Ga0182217_1120465	Not Available	616	Open in IMG/M
3300017447\|Ga0182215_1164322	Not Available	516	Open in IMG/M
3300017694\|Ga0182211_1131648	Not Available	592	Open in IMG/M
3300017694\|Ga0182211_1169058	Not Available	522	Open in IMG/M
3300020023\|Ga0182178_1014843	Not Available	585	Open in IMG/M
3300020033\|Ga0182146_104941	Not Available	556	Open in IMG/M
3300025925\|Ga0207650_10826609	Not Available	785	Open in IMG/M
3300025931\|Ga0207644_10834117	Not Available	772	Open in IMG/M
3300025936\|Ga0207670_11522099	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	569	Open in IMG/M
3300025961\|Ga0207712_11146563	Not Available	693	Open in IMG/M
3300028049\|Ga0268322_1034130	Not Available	600	Open in IMG/M
3300028051\|Ga0268344_1025400	Not Available	510	Open in IMG/M
3300028053\|Ga0268346_1022486	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	627	Open in IMG/M
3300028058\|Ga0268332_1029078	Not Available	720	Open in IMG/M
3300028058\|Ga0268332_1039249	Not Available	651	Open in IMG/M
3300028061\|Ga0268314_1037775	Not Available	574	Open in IMG/M
3300028062\|Ga0268342_1026397	Not Available	603	Open in IMG/M
3300028063\|Ga0268350_1051067	Not Available	600	Open in IMG/M
3300028140\|Ga0268334_1014198	Not Available	558	Open in IMG/M
3300028141\|Ga0268326_1011360	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	541	Open in IMG/M
3300028143\|Ga0268348_1005055	Not Available	831	Open in IMG/M
3300028148\|Ga0268354_1012181	Not Available	701	Open in IMG/M
3300028148\|Ga0268354_1017723	Not Available	582	Open in IMG/M
3300028153\|Ga0268320_1006889	Not Available	772	Open in IMG/M
3300028471\|Ga0268323_1009736	Not Available	642	Open in IMG/M
3300028474\|Ga0268331_1006902	Not Available	767	Open in IMG/M
3300032465\|Ga0214493_1105756	Not Available	667	Open in IMG/M
3300032465\|Ga0214493_1151408	Not Available	537	Open in IMG/M
3300032465\|Ga0214493_1162637	Not Available	513	Open in IMG/M
3300032467\|Ga0214488_1000985	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3300	Open in IMG/M
3300032468\|Ga0214482_1067136	Not Available	690	Open in IMG/M
3300032490\|Ga0214495_1013050	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	1693	Open in IMG/M
3300032550\|Ga0321340_1018528	Not Available	972	Open in IMG/M
3300032551\|Ga0321339_1083388	Not Available	734	Open in IMG/M
3300032591\|Ga0214484_1068427	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	750	Open in IMG/M
3300032591\|Ga0214484_1085358	Not Available	659	Open in IMG/M
3300032593\|Ga0321338_1010019	Not Available	2434	Open in IMG/M
3300032689\|Ga0214497_1076861	Not Available	737	Open in IMG/M
3300032697\|Ga0214499_1119576	Not Available	812	Open in IMG/M
3300032757\|Ga0314753_1027387	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1030	Open in IMG/M
3300032758\|Ga0314746_1021468	Not Available	1384	Open in IMG/M
3300032758\|Ga0314746_1051328	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	954	Open in IMG/M
3300032781\|Ga0314742_1070631	Not Available	600	Open in IMG/M
3300032812\|Ga0314745_1066459	Not Available	772	Open in IMG/M
3300032823\|Ga0314723_1044006	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	854	Open in IMG/M
3300032826\|Ga0314732_113539	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	821	Open in IMG/M
3300032827\|Ga0314730_119395	Not Available	735	Open in IMG/M
3300032889\|Ga0314751_1084354	Not Available	643	Open in IMG/M
3300032914\|Ga0314750_1081417	Not Available	753	Open in IMG/M
3300032915\|Ga0314749_1136602	Not Available	521	Open in IMG/M
3300032916\|Ga0314734_1022779	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1201	Open in IMG/M
3300033532\|Ga0314767_1130825	Not Available	629	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	96.52%
Environmental	Environmental	3.48%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	96.52%
Terrestrial	Environmental → Terrestrial	3.48%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	90.43%
Soil	Environmental → Terrestrial → Soil	3.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.48%
Unclassified	Host-Associated → Plants → Unclassified	2.61%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	90.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	2.61%
Loam	Environmental → Terrestrial → Soil → Loam	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	90.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	76.52%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	13.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	2.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300009994	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015278	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015280	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015293	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015331	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015339	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017408	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017445	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017446	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300020023	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG	Host-Associated	Open in IMG/M
3300020033	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12JUL2016_LD2 MG	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028049	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028051	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028053	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028061	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028063	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028140	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028141	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028143	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028148	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028153	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028471	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028474	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300032465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032467	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032468	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032490	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032550	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032551	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032591	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032593	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032689	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032697	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032757	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032758	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032781	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032812	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032823	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032826	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032827	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032889	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032914	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032915	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032916	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033532	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070668_1009650781	3300005347	Switchgrass Rhizosphere	CLITHSRANLALTLTKLVLRTKNLNSMLLDGLEVFLGVCVMSWDSSKLQMAGGTHIYRPPCQESRY*
Ga0105126_10297391	3300009994	Switchgrass Associated	LITHSRANLALTLIKHVLRTKDLISMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPT
Ga0105126_10321191	3300009994	Switchgrass Associated	LITHSRANLALTLTKLVLRTKDLNYMLLDGLEVFLDVCVMSWDSSNLQMAGGAHIYRPPSLVAVAPM
Ga0105139_10205791	3300009995	Switchgrass Associated	THLGANLAPTLTKLVLRTKDLISMLLDGLEVFLDVCVISLDSSKLKMAGVRHIYRPPTQESRY*
Ga0134122_111958711	3300010400	Terrestrial Soil	ALTLTKLVLRTKDLIFMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPCQESRY*
Ga0134122_128749021	3300010400	Terrestrial Soil	SRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNSSKLKMAGGAHIYRPPSRTSHL*
Ga0134121_126387111	3300010401	Terrestrial Soil	ALTLKKLVLRTKDLNSMLLDGLEVFFGMCGMSSNSSKLQMAGGAHIYRPPSRISRL*
Ga0182183_10693452	3300015270	Switchgrass Phyllosphere	LEVFLGDLALTLSKLVLRTKDLNSMLLDGLEVFLGVNVTSRNSSNSKMAGGSHIHSPQT*
Ga0182099_10239181	3300015278	Switchgrass Phyllosphere	KPCLITHSRANLALTLAKLVLRTKDLNSMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPCQESRY*
Ga0182100_10414581	3300015280	Switchgrass Phyllosphere	NLALTLTKLVLRTKDLIFMLLDGLEVFLDVYEMSWDSSYLQMAGVRHIYRPPTQTRC*
Ga0182105_10460731	3300015290	Switchgrass Phyllosphere	LFTHSRANLALTLTKFVLRTKDLIFMLFDGLEVFLGVYEMSWDSSKLKIAGVRRIYRPPTQESRY*
Ga0182105_10526851	3300015290	Switchgrass Phyllosphere	LIAHSRANLALTLTKLVLRTKDLIIMLFDGLEMFLGVCRMSSKLQMAGVRCIYRPPSLV
Ga0182103_10662381	3300015293	Switchgrass Phyllosphere	LALTLTKLVLRTKDLIFMLLDGLEVFLGVCGMSSNSSKLKMAGGAHIYRPPSRTSHL*
Ga0182103_10712521	3300015293	Switchgrass Phyllosphere	LQSHSLRAILALALYKLVLKAKDMILMLLYGLEMFLGVCGMFSNSSNLQMAGVRRIYRPPSLV
Ga0182104_10272411	3300015297	Switchgrass Phyllosphere	TTAQGSKYCLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLGVCMTSSNSSLLKIAGVRRIYRSPTQESRY*
Ga0182104_10613601	3300015297	Switchgrass Phyllosphere	TTAQGSKPCLITHSRANLALTLTKLVLRTKNLIFMLLDGLEVFLGVSGMSSNSSKLQMVGGTHIYRPPT*
Ga0182104_10744391	3300015297	Switchgrass Phyllosphere	NLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNSSKLQMAGGAHIYRPPSRTSRL*
Ga0182104_11090392	3300015297	Switchgrass Phyllosphere	THSRANLALTLTKLVLRTKDLISMVLDGLEVFLDVYGMSLNSSKLQMARGWHIYRPPC*
Ga0182104_11171461	3300015297	Switchgrass Phyllosphere	TAQVSKPYLITHSRANLALTLTKLVLRTKDLNSMVLDGLEVFLGVYEMSWNSRKLQMAGGTHIYRSPT*
Ga0182184_10241841	3300015301	Switchgrass Phyllosphere	ANLALTLTKLVLRTKNKISMLLDGLEVFLGVCVMSWDSSKLKIARVRPIYRPPTQESRY*
Ga0182184_10537811	3300015301	Switchgrass Phyllosphere	TQGSKPCLITHSRANLALTLTKLVLRTKNLNSMLLDGLKVFLGVCVCVMSWDSSKLKIAGVRRIYRPPTQESRY*
Ga0182180_10566511	3300015306	Switchgrass Phyllosphere	HSRANLALTLTKLVLRTKNLISMLLDGLEVFLDVSVMSWDSNNLQMAREAHIYWPPSRTSHL*
Ga0182182_11168901	3300015311	Switchgrass Phyllosphere	NLTLTLTKLVLRTKDLNSMLLDGLEVFLGVCVCVCVMSWDSSKLQMAGGTHIYRPQT*
Ga0182168_10522092	3300015312	Switchgrass Phyllosphere	QGSKSYLITHSRANLALTLTKLILRTKDLISMLLDGLEMFLDMCVMSWDSSKLQMAGGTHIYRPPSRTSHL*
Ga0182121_11016431	3300015316	Switchgrass Phyllosphere	RANLTLTLIKLVLMTKDLISMLLYGLEVFLGVCMTSSNSSKLQMAGGAHIYRPPSRTSHL
Ga0182136_11119001	3300015317	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKNLIFMLLDGLEVFLGVSGMSSNSNKLQIAGGTHI
Ga0182181_10384501	3300015318	Switchgrass Phyllosphere	ANLALTLTKLVIRTKNLIFILLDGLEVSLDVYEMSWDSSNIQMAGGAHIYRPPT*
Ga0182130_10479101	3300015319	Switchgrass Phyllosphere	PCLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLDVYEISWDSSKLQMAGGAHIYRPPSRTSRL*
Ga0182130_11365191	3300015319	Switchgrass Phyllosphere	THSRANLALTLTKLVLRTKDLIFMLLDGLEVFLDVCMMSWDTSNLQMAGVRHIYNPPTQESRY*
Ga0182114_10741912	3300015327	Switchgrass Phyllosphere	QGSKPCLITHSRANLALTLIKHVLRTKDLISMLLDGLEVFLGVCATSSNSSNLQMAGVRCIYWPPTLK*
Ga0182114_11135321	3300015327	Switchgrass Phyllosphere	PCLITHSRVNLALTLIKLVLRTKDLNSMLLDGLEVFLGVCVMSWDSSKLTMAGVRRIYRPLIQESRY*
Ga0182153_11075051	3300015328	Switchgrass Phyllosphere	THTSANLALTLTKLVLRTKDLISMLLDGLEVFLGVYEMSSDSSQHQMAEGTHIYRPPCQESRY*
Ga0182153_11434631	3300015328	Switchgrass Phyllosphere	RANLALTLTKLVLRTKDLNSMLLDGLEVFLGMCGMSSNSSNLQMAGGAHIYRPQTRTSRLES*
Ga0182135_11036651	3300015329	Switchgrass Phyllosphere	KPCLITHSRANLALTLTKFVLRTKDLIFMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPCQESRY*
Ga0182152_11074291	3300015330	Switchgrass Phyllosphere	ANLALTLTKLVLKTKDFIFMLLDGLEVFLDVCVMSWDSSNLQMAGGAHI*
Ga0182131_10044112	3300015331	Switchgrass Phyllosphere	KPCLYTHSRANLALTLTKLVLRTKNLIFMLLDGLEVFLDVYEMSWDSSNLQMAGVRHIYRPPTQESHY*
Ga0182131_10530651	3300015331	Switchgrass Phyllosphere	THLGANLALTLAKVVLRTKDLISKLLDSLEVFLGVCVMSWNSSKLQMAGGAHIYSLPI*
Ga0182131_11219781	3300015331	Switchgrass Phyllosphere	THSRANLALTLTKLVLRTKDLIFMLLDGLEVFLDMYEMSWDSSNLQMAGGAHIYRPPSRTSRL*
Ga0182147_11143871	3300015333	Switchgrass Phyllosphere	TTAQGSKPCLITHSRANLALTLTKLVLRNKDLIFMLLDGLEVFLDVSGMSSNSDKLQMAGGAHIYRPPSRTSRL*
Ga0182147_11531341	3300015333	Switchgrass Phyllosphere	ANLALTLTKLLLRTKDLICMLLDVLEVFLDVYEMSWDSSKLQMAEGAHIYRPPSRTSHL*
Ga0182116_11299521	3300015335	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLGVCGMSSNSSKLKMAGEAHIYRPPSRTSCSR*
Ga0182116_11424091	3300015335	Switchgrass Phyllosphere	THSRANLALTLTKFVLRTKNLISMLLDGLKVFLDVCVMSWDSSKLQMAGGAHIYRPHT*
Ga0182151_10836921	3300015337	Switchgrass Phyllosphere	THLGTNLALTLTKLVLRTKNLISMLLDGLEVFLDMCVMSWDSSKLTMAGVRRIYRPPTQESCY*
Ga0182149_11096532	3300015339	Switchgrass Phyllosphere	HSRANLALTLTKLVLRTKDLIFMLLNGLEVFLDVCVMSWDSSNLQMAGEHIYIGL*
Ga0182133_10946701	3300015340	Switchgrass Phyllosphere	LALTLTKLVLRTKDLIFMLLDGLDVFLDVCVMSWDSSNLQMAGGAHIYRPPSRTSRL*
Ga0182163_12486772	3300015350	Switchgrass Phyllosphere	NLALTLTKLVLRTKDLNFMLLDGLEVFLDVCGMSSNSSKLQMAEGAHIYRTLSQTSR*
Ga0182169_11700261	3300015352	Switchgrass Phyllosphere	TLTKFVLRTKNLIFILLDGLEVFLSMSGMSNNSNNLQMAGEAHIYRPPSRTSHL*
Ga0182169_11799001	3300015352	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKNLISMLLDGLEVFLDVCVMSWDSNKLKIVGVRHIYRPPTQESRY*
Ga0182179_12885371	3300015353	Switchgrass Phyllosphere	DPCLITHSRVNLALTLTKLVLRTKDLIFMLLDGLEVFLDVYEMSWDSSKLQMAGEAHIYRPPSRTSRL*
Ga0182179_13088901	3300015353	Switchgrass Phyllosphere	RANLALTLTKLVLRTKDLISMLLDGLEVFLNVCVMSWDSSKLQMAGGNTYI*
Ga0182167_11820661	3300015354	Switchgrass Phyllosphere	RANLALTFTKLVLRTKDLIFMLLDGLEVFLDVCVMSWDSRNLQIAGGTHIYRPPTQESRY
Ga0182197_10703251	3300017408	Switchgrass Phyllosphere	HSRANLALTLTKLVLRTKDLIFILLDGLEMFLGVCGMFSNSSNLQMAGVRHIYRPPIQESCY
Ga0182199_11204051	3300017412	Switchgrass Phyllosphere	RANLALTLTKLVLRTKDLIFMLLDGLEVFLDVCTMSWDSSKSKMAGGTHIYRPPSRTSRL
Ga0182201_10343102	3300017422	Switchgrass Phyllosphere	LTKLVLRTKDLIFMLLDGLEVYLGVSGMSSNSSKLKMSGMRRIYRPPCQESRY
Ga0182196_10190871	3300017432	Switchgrass Phyllosphere	ALTITKLVLRTKDLIFMLLNGLEVFLDVCVMSWDSINLQMAGRAHIYRPHT
Ga0182200_10927262	3300017439	Switchgrass Phyllosphere	CLITHSRANLALTLTKLVLRTKDLNSMLLDGLEVFLGVSGMSSNSSKLQMAGGTHIYRPP
Ga0182198_10150164	3300017445	Switchgrass Phyllosphere	LITHSRVNLALTLTKYVLRTKDLISMFLDGLEVFLDACVMSWDSSKLKMAGVRYIYRSPTQERRY
Ga0182198_11078021	3300017445	Switchgrass Phyllosphere	LITHSRVNLALTLTKYVLRTKDLISMFLDGLEVFLDLCVMSWDSSKLKMAGVRRIYRPPTQESRY
Ga0182198_11078022	3300017445	Switchgrass Phyllosphere	SKPCLFTHSRANLALTLPKLVLKPKDMINKLLDGLEVFLGVYEMSWDSSNLQMAGGTHIYRPPTQESRY
Ga0182198_11420661	3300017445	Switchgrass Phyllosphere	LRANLALTLTKLVIRNKDLISMLLDDLEVFLDVYEASRNSNKLQMAGVRHIYSS
Ga0182198_11547831	3300017445	Switchgrass Phyllosphere	ITHPRANLALTLTKLVLRTKDLISMLLDGLEVFLNVCVMSWDSSKLQMAGGNTYI
Ga0182198_11639321	3300017445	Switchgrass Phyllosphere	GSKPYLITHSRANLALTLTKLVLRTKDLISMLLDGLEMFLDVCMMSWDSSKLKIAGVRRIYRPPT
Ga0182217_10930581	3300017446	Switchgrass Phyllosphere	ANLALTFTKFVLRTKDLIFMLLDGLEMFLGVCGMFSNSSKLQMAGGTHIYRPPT
Ga0182217_11204651	3300017446	Switchgrass Phyllosphere	RTTAQGSKTCLITHSRDSIALTLTKIVLRTKDLIFMLLDGLEMFLDVCGMFSNSSKLQMAGGAHIYRPPSRTSRL
Ga0182215_11643222	3300017447	Switchgrass Phyllosphere	HSRANLALTLTKLVLRTKNLIFMLLDGLEMFLGVCGMFSNSTKLQMAGGAHIYRPHT
Ga0182211_11316481	3300017694	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNSSNLQMAGVRRIYRP
Ga0182211_11690581	3300017694	Switchgrass Phyllosphere	AQGSKPYLITHSRANLALTLTKLVLRTKNLIFMLLDGLEVFLDVYEMSWDSSNLQMAGGAHIYI
Ga0182178_10148431	3300020023	Switchgrass Phyllosphere	SKPCLITHSRANLALTLMKLVLRTKDLNFMLLEGLEMFLGMYGMFSNSSNLQMARGVI
Ga0182146_1049411	3300020033	Switchgrass Phyllosphere	ITHSRVNLALTLTKLVLRTKDLIFMLLDGLEVFLDVYEMSWDSSKLKMAGGAHIYRPSSRTSRL
Ga0207650_108266091	3300025925	Switchgrass Rhizosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNSSKLQMAGVRRIYRPPSLVAVA
Ga0207644_108341171	3300025931	Switchgrass Rhizosphere	ITHSRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFINSSNLKMAGVRRIYRPPTQESRY
Ga0207670_115220991	3300025936	Switchgrass Rhizosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNFSNLKMAGVRRIYRPSTQESRY
Ga0207712_111465631	3300025961	Switchgrass Rhizosphere	SRANLALIFTKFLLRTKDLIFMLLDGLEVFLDVYEMSWDSSNLQMAGGAHIYRPPSRTSR
Ga0268322_10341301	3300028049	Phyllosphere	SKPCLITHSRANLALTLTKLVLRTKNLISMLLDGLEVFLDVCVMSWDSNKLKIVGVRHIYRPPTQESRY
Ga0268344_10254001	3300028051	Phyllosphere	LTLTKLVLRTKDLIFMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPCQESRY
Ga0268346_10224862	3300028053	Phyllosphere	LITHSRANLALTLTKLMLRTKDLIFMLLDGLEMFLGVCGMFSNSSNLKMAGVRRIYRPPT
Ga0268332_10290781	3300028058	Phyllosphere	VALTLTKLVLRTKNLIFMLLDGLEVFLDVCVMSWDSSHLQMAGGAHIYRPPSRTSRL
Ga0268332_10392491	3300028058	Phyllosphere	PCLYTHLGANLAPTLTKLVLRTKDLISMLLDGLEVFLDVCVISLDSSKLKMAGVRHIYRPPTQESRY
Ga0268314_10377751	3300028061	Phyllosphere	LITHSRANLALTLTKLVLRTKDMINELLYGLEVFLGVYEMSWDSSKLKIAGVRRIYRPPTQESRY
Ga0268342_10263971	3300028062	Phyllosphere	ANLALTLTKLVLRTEDLNSMLLDGLEVFLGMCGMSSNSSNLQMAGGAHIYRPPTRTSYLE
Ga0268350_10510671	3300028063	Phyllosphere	SRANLALTLTKLVLRTKDLNSMLLDGLEVFLGVCVMSWDSSKLQMAGGAHIYRPPSRTSR
Ga0268334_10141981	3300028140	Phyllosphere	GSKLCLITHSRAKLALTLTKLVLRTKDLIFMLLNGLEVFLDVCVMSWDSSNLQMAGGAHIYRPHT
Ga0268326_10113601	3300028141	Phyllosphere	LYTHSRANLALTLTKLVLRTKNLIFMLLDGLEVFLDVYEMSWDSSNLQMAGVRHIYRPPTQESHY
Ga0268348_10050551	3300028143	Phyllosphere	LSRANLTLTLTKLVLRTKDLIFMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPCQESRY
Ga0268354_10121811	3300028148	Phyllosphere	ALTLTKLVLRTKDLNSMLLDGLEVFLGVCVMSWDSSKLQMAEGTHIYRPPP
Ga0268354_10177231	3300028148	Phyllosphere	SRANLALTLTKLVLRTKDLIFMLLDGLEVFLGVSGMSSNSSKLKMAGVRRIYRPPTRTSR
Ga0268320_10068891	3300028153	Phyllosphere	NLALTLTKLVLRTKDLIFMLLDGLEVFLDVCVMSWDSSNLQMAGEAHIYRPPSRTSRL
Ga0268323_10097361	3300028471	Phyllosphere	LITYSRANLALTLTKLVLRTKNLIFMLLDDLEVFLDMYVMSWDSSKLQMAGGAHIYRPPSRTSHL
Ga0268331_10069021	3300028474	Phyllosphere	LELTLTKLVLRTKDLIFMLLDGLEVFLDMYEMSWDSSNLQMAGGAHIYRPPSRTSHL
Ga0214493_11057561	3300032465	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLKTKNLIFMLLDGVEVFLGVSEMSSNSSKLKMAGGAHI
Ga0214493_11514081	3300032465	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLEMFLGVCGMFSNFSNLKMAGVRRIYRPPT
Ga0214493_11626371	3300032465	Switchgrass Phyllosphere	RANLALTLTKLVLRTKDLNFMLLDGLEVFLGVSGMSSNSSKLKMAGGAHIYRPPTQTSRL
Ga0214488_10009851	3300032467	Switchgrass Phyllosphere	ALILTKLVLRTKDLISMLLDGLEVFLDACVMSWDSNKLHMAGGIHIYRPPT
Ga0214482_10671362	3300032468	Switchgrass Phyllosphere	LTHLGANLALTLIKLVLRTKNLISMLLDGLEVFLGVSEMSSNSSKLKMAGGAHIYRPPTQTSRL
Ga0214495_10130501	3300032490	Switchgrass Phyllosphere	PCLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLDVYLMSWDSNNLQMAGGANIYRPPT
Ga0321340_10185281	3300032550	Switchgrass Phyllosphere	THSRANLALILTKLVLRTKNLISMLLDGLEVFLDVCVMSWDSNKLHMAGGTHIYRPPT
Ga0321339_10833881	3300032551	Switchgrass Phyllosphere	LALTFIKLVLRTKNLISMLLDGLDVFLDMCVMSWDSSKLQMAGGTHIYRPPSRTSRL
Ga0214484_10684271	3300032591	Switchgrass Phyllosphere	SKPCLITHSRANLALTLTKLVLRTKDLIFMFLDGLDVFLDVYEMSWDSSNLQMAGGAHIYRPPTRTSR
Ga0214484_10853581	3300032591	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKDLIFMLLDGLKMFLGVYGMFSNSSRLKMAGVRHIYG
Ga0321338_10100192	3300032593	Switchgrass Phyllosphere	ANLALILTKLVLRTKDLISMLLDGLEVFLDVCVMSWDSNKLHMAGGTHIYRPPT
Ga0214497_10768612	3300032689	Switchgrass Phyllosphere	QELRANLALTLTKLVLRTKDLISMLLDGLEVFLDVCVMSWDSSKLQMAGGTHIYRPPT
Ga0214499_11195761	3300032697	Switchgrass Phyllosphere	CLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLGVDVMSWDSSKLQMAGGTHIYRPPCQESRY
Ga0314753_10273871	3300032757	Switchgrass Phyllosphere	ANLALILTKLVLRTKDLISMLLDGLEVFLDACVMSWDSNKLHMAGGTHIYRPPT
Ga0314746_10214681	3300032758	Switchgrass Phyllosphere	ANLALILTKLVLRTKDLISMLLDGLEVFLDACVMSWDSNKLHMAGGIHIYRPPT
Ga0314746_10513284	3300032758	Switchgrass Phyllosphere	KPCLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLDVYLMSWDSNNLQMAGGANIYRPPT
Ga0314742_10706311	3300032781	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKNLITKFLDGLEVFLGVGMTSSSSSKLKMAGVRRIYRP
Ga0314745_10664591	3300032812	Switchgrass Phyllosphere	HSRANLALTLTKLVLRTKDLNSMLLDGLEVFLCVCVMSWDSSKLQMAGVRHIYSHPT
Ga0314723_10440061	3300032823	Switchgrass Phyllosphere	ITHSRANLTLTLTKFVLRTKDLISMLLDGLEVFLDVFVMSWDSNNLQMAGGAHIYRPPSRTSRL
Ga0314732_1135393	3300032826	Switchgrass Phyllosphere	LALTLTKLVLRTKDLIFMFLDGLDVFLDVYEMSWDSSNLQMAGGAHIYRPPTRTSC
Ga0314730_1193951	3300032827	Switchgrass Phyllosphere	ALTLTKLVLMTKDFIFMLLDGLEMFLGVCGMFSNSSNLQMAGGAHIYRPPSRTSRL
Ga0314751_10843541	3300032889	Switchgrass Phyllosphere	LITHSRANLALTLTKLVLRTKDLNFMLLDGLEVFLGVSGMSSNSSKLKMAGGAHIYRPPTQT
Ga0314750_10814171	3300032914	Switchgrass Phyllosphere	ITHSRDNLALTLTKLVLRTKDLIFMLLDGLEVFLGVSEMSSNSSKLKMAGGAHIYRPPTQTSRL
Ga0314749_11366022	3300032915	Switchgrass Phyllosphere	ANLVLILTKLVLRTKDLIFKLLDGLEVFLGVRVMSWNSNKLQMAGVRHIYSPPT
Ga0314734_10227791	3300032916	Switchgrass Phyllosphere	PCLITHSRANLALTLTKLVLRTKDLIFMLLDGLEVFLGVSEMSSNSSKLKMAGGAHIYRPPTQTSRL
Ga0314767_11308251	3300033532	Switchgrass Phyllosphere	GSQPYLITLSRANLTLTLTKLVLRTKDLTFMLLDGLEVFLDVYLMSWDSNNLQMAGGANIYRPPT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079454

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences