Basic Information | |
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Family ID | F079368 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 42 residues |
Representative Sequence | AGLHKARPAPIDVGALARYDRPLPDLADYDTLLSGPCAGTA |
Number of Associated Samples | 109 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 2.59 % |
% of genes near scaffold ends (potentially truncated) | 94.83 % |
% of genes from short scaffolds (< 2000 bps) | 96.55 % |
Associated GOLD sequencing projects | 107 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (75.862 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (8.621 % of family members) |
Environment Ontology (ENVO) | Unclassified (13.793 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.448 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.84% β-sheet: 0.00% Coil/Unstructured: 81.16% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Lake Freshwater Lake Hypolimnion Bog Forest Soil Bog Polar Desert Sand Natural And Restored Wetlands Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Surface Soil Soil Agricultural Soil Arctic Peat Soil Permafrost Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Untreated Peat Soil Permafrost Soil Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Biocrust Hypolithic Biocrust Soil Fen Palsa Bog Rock Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12704J13340_10087591 | 3300001170 | Forest Soil | KARPVPIDVGGLARYDRPMPSVVDYDTLLISTPCVGSA* |
C688J13580_10071353 | 3300001205 | Soil | YLLIEAWLHKAEPEPIDVGALARYDRPLPDLADYDTLLSAPCAGTA* |
JGI20185J14861_10122862 | 3300001409 | Arctic Peat Soil | AAVRYLLTEAGLHKAKPEPIDVGALARYDRPLPNLADYDTLLSGPCAGTA* |
JGI24739J22299_100779982 | 3300001989 | Corn Rhizosphere | EAALHKAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA* |
JGIcombinedJ26739_1017726552 | 3300002245 | Forest Soil | LHKARPGPVDVGALARYDRPLPNLADYDTLLSGPCAGTA* |
C688J35102_1191140451 | 3300002568 | Soil | VRYLLGEVGLHKARPATVDVGELARYDRPMPGVADYDTLLLSGPCAGRA* |
C688J35102_1199071152 | 3300002568 | Soil | EAALHKAQPMPVDVGELARYDRPMPGVADYDTLLVSSPCAGRA* |
Ga0065715_104065421 | 3300005293 | Miscanthus Rhizosphere | AALHKAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA* |
Ga0070714_1024387052 | 3300005435 | Agricultural Soil | VRYLLTEAGLRKARAVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA* |
Ga0070679_1020894481 | 3300005530 | Corn Rhizosphere | TEAGLHKVPQAPVDVGALARYDRPLPDLADYDTLLTGPCAGTA* |
Ga0070735_105617791 | 3300005534 | Surface Soil | KGEPAAIDVGELARYDRPLPTMAEYDVLLSGACAGTA* |
Ga0068854_1006994441 | 3300005578 | Corn Rhizosphere | EASLQRAPAAPIDVGELARYDRPLPSVADYDTLLLSTPCAGTA* |
Ga0070763_108950061 | 3300005610 | Soil | KAKPEPIDVGALARYDRPLPDLADYDTLLSGPCVGTA* |
Ga0068851_106275152 | 3300005834 | Corn Rhizosphere | AGAVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA* |
Ga0068858_1020549651 | 3300005842 | Switchgrass Rhizosphere | EAALHKARPEPVDVGALARYDRPLPNLADYDTLLVSTPCAGTA* |
Ga0075029_1008689831 | 3300006052 | Watersheds | ARPAPIDVGALARYDRPLPDLADYDTLLSGPCAGTA* |
Ga0079219_100839043 | 3300006954 | Agricultural Soil | MRIAAAVRYLLTEASLHKAEPEPIDVGALVRYDRPLPDLADYDT |
Ga0105857_10857381 | 3300009650 | Permafrost Soil | RPVAVDVGALARYDRPLPNLADYDTLLVSTPCAGSA* |
Ga0126314_111158101 | 3300010042 | Serpentine Soil | VRYLLTEAGLHKARPEPIDVGALVRYDRAVPNLADYDTLLSGPCAGTA* |
Ga0126314_114081062 | 3300010042 | Serpentine Soil | PAPVDVGELARYDRPVPSVADYDTLLLSGPCAGTA* |
Ga0126311_100870251 | 3300010045 | Serpentine Soil | TKPEPIDVGALARYDRPLPDLADYDTLLSAPCAGSA* |
Ga0126306_108302062 | 3300010166 | Serpentine Soil | LHKARPAPVDVGELARYDRPVPSVADYDTLLLSGPCAGRA* |
Ga0134125_114478371 | 3300010371 | Terrestrial Soil | LLTEAGLRKGAPAAIDVGELARYDRPLPTMAEYDVLLSGACAGTA* |
Ga0126381_1016187081 | 3300010376 | Tropical Forest Soil | AVRYLLTEAPLHKLRRDPIDVGTLARYDRPMPDLGDYDTLLSGSCAGTA* |
Ga0134126_115293381 | 3300010396 | Terrestrial Soil | ARPEPVDVGMLARYDRPLPTLADYDTLLSGPCAGTA* |
Ga0134126_122887732 | 3300010396 | Terrestrial Soil | LTEAGLRKARAVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA* |
Ga0126359_14765831 | 3300010869 | Boreal Forest Soil | RYLLTEAGLHKARAEPVDVGALARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0120157_10708142 | 3300011994 | Permafrost | MQTEKGSVEAAVRYLLTEAGLHKARPDPVDVGVLARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0120152_10554861 | 3300012011 | Permafrost | AGLHKARPDPVDGGVLARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0120159_10658633 | 3300012014 | Permafrost | PDPVDVGVLARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0164307_104526861 | 3300012987 | Soil | EASLHKAQPAPIDVGTLARYDRPLPDLADYDMLLSAPCAGNA* |
Ga0136639_102878981 | 3300013097 | Polar Desert Sand | AALHKARPLPVDVGDLARYDRPMPSVADYDTLLVSSPCVGRA* |
Ga0120135_10770452 | 3300014054 | Permafrost | AGLHKARPEPVDVGTLARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0120149_12225522 | 3300014058 | Permafrost | GLHKARPDPVDVGVLARYDRPLPNLADYDTLLSGPCAGTA* |
Ga0181529_106747721 | 3300014161 | Bog | DPVDVGELARYDRPLPDLADYDTMLFSTPCAGTA* |
Ga0157376_129236581 | 3300014969 | Miscanthus Rhizosphere | AVRYLLGEAGLHKARPATVDVGALARYDRPMPGVAEYDTLLVSSPCAGRA* |
Ga0137414_12299872 | 3300015051 | Vadose Zone Soil | LLTEAGLHKGQAYAIDVGELARYDRPMPTMAEYDVLLLAPCVGTA* |
Ga0137403_115381701 | 3300015264 | Vadose Zone Soil | LHKARPEPVDVGALARYDRPLPNLADYDTLLVSTPCLGTA* |
Ga0134072_100426183 | 3300015357 | Grasslands Soil | AAVRYRLSEASLRKAEPIDVGALVRYDRPLPDLADYDTFLSAPCAGNA* |
Ga0182033_111139902 | 3300016319 | Soil | TEASLQRAPAALIDVGELARYDRPLPSVADYDTLLRGTPCAGTA |
Ga0136617_106728202 | 3300017789 | Polar Desert Sand | AVRYLLGEAGLHKARPDPIDVGALARYDRPMPTVADYDMLLSSRPCAGAAG |
Ga0066667_105233832 | 3300018433 | Grasslands Soil | EPHAIDVGELARYDRPLPTMAEYDVLLSGACAGTA |
Ga0190273_109655992 | 3300018920 | Soil | GEAALHKPLPMAVDVGELARYDRPMPSVADYDTLMPSSPCAGRA |
Ga0210401_111754892 | 3300020583 | Soil | PVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA |
Ga0210386_104163013 | 3300021406 | Soil | PEPVDVGALARYDRPLPNLADYDTLLVSTPCAGTA |
Ga0210391_105506112 | 3300021433 | Soil | VRYLLTEAGLHKARPVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA |
Ga0224549_10365461 | 3300022840 | Soil | EAGLHKTHPEPINVGELARYDRPPSNFADYDMLLRGQCVGNA |
Ga0247743_10173722 | 3300023067 | Soil | QPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA |
Ga0247794_100152143 | 3300024055 | Soil | LTEASLHKAEPEPIDVGALVRYDRPLPDLADYDTLLSAPCAGNA |
Ga0209697_102362371 | 3300025316 | Freshwater Lake Hypolimnion | PDPVDVGELARYDRPLPDLADYDTLLLSTPCAGTA |
Ga0210120_10367791 | 3300025556 | Natural And Restored Wetlands | AVRYLLTQAGLHKVRPEPIDVGVLARYDRPLPDLAAYDTLLSGPCAGTA |
Ga0207647_107665492 | 3300025904 | Corn Rhizosphere | LLGEAALHKAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA |
Ga0207693_103715253 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | LHKAQPAPIDVGTLARYDRPLPDLADYDMLLSAPCAGNA |
Ga0207652_118662592 | 3300025921 | Corn Rhizosphere | TEAGLHKVPQAPVDVGTLARYDRPLPDLADYDTLLTGPCAGTA |
Ga0207686_114413972 | 3300025934 | Miscanthus Rhizosphere | GLHKARPATIDVGALARYDRPMPGVAEYDTLLVSSPCAGRA |
Ga0207679_114260291 | 3300025945 | Corn Rhizosphere | QPMPIDVGALARYDRPMPSVADYDTLLLSSPCAGRA |
Ga0207679_116080231 | 3300025945 | Corn Rhizosphere | RKAGAVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA |
Ga0207641_113299322 | 3300026088 | Switchgrass Rhizosphere | VLRKAEPEPIDVGALARYDRPLPDLADYDTLLSAPGAGTA |
Ga0207683_120828211 | 3300026121 | Miscanthus Rhizosphere | DVAAVRYLLTEAGLRKAGAVPIDVGVLARYDRPMPSVVDYDTLLISTPCVGSA |
Ga0207746_10099752 | 3300026865 | Tropical Forest Soil | PAAPIDVGELARYDRPLPSVADYDTLLLSTPCAGTA |
Ga0207805_10224891 | 3300026887 | Tropical Forest Soil | APAAPIDVGELARYDRPLPSVADYDTLLLSTPCAGTA |
Ga0209326_10124552 | 3300026899 | Forest Soil | RYLLTEASLHKAEPEPIDVGALVRYDRRLPDLADYDTLLSAPCAGNA |
Ga0208986_10246222 | 3300027031 | Forest Soil | TETGLHKAKPALIDVGALARYDRPMPSVADYDTLLTSTPCVGTA |
Ga0208996_10236132 | 3300027257 | Forest Soil | AGLHKARPAPIDVGALARYDRPLPDLADYDTLLSGPCAGTA |
Ga0208996_10486631 | 3300027257 | Forest Soil | VAAVRYLLTEAGLHKAKPEPIDVGALVRYDRPLPNLADYDMLLSGPCAGTA |
Ga0208999_10702231 | 3300027303 | Forest Soil | KPALIDVGALARYDRPMPSVADYDTLLISTPCVGTA |
Ga0209656_101774971 | 3300027812 | Bog Forest Soil | LLTEAGLHKARPEPVDVGMLARYDRPLPTLADYDTLLSGPCAGTA |
Ga0207428_103653462 | 3300027907 | Populus Rhizosphere | AVRYLLGEAALHKAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA |
Ga0209526_109443171 | 3300028047 | Forest Soil | RYLLTEAGLRKARPEPIDVGALARYDRPVPGMADYDTLLVSTPCAGNA |
Ga0268264_107760892 | 3300028381 | Switchgrass Rhizosphere | GEAALHKAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA |
Ga0304729_12460881 | 3300028392 | Freshwater Lake | GQAGLQKAPPVPVDVGRLARYDRPMPSVADYDTLLPGSRCVGTA |
Ga0302301_10606631 | 3300028731 | Palsa | HKARPDPIDVGALARYDRPMPSIADYDALLISTPCVGTA |
Ga0302214_10355281 | 3300028736 | Fen | TEAGLHKARPEPVDVGVLARYDRPPPSLADYDTLLSGPCAGTA |
Ga0307318_101678162 | 3300028744 | Soil | RYLLTEAGLHRARPNPVDVGVLARYDRPLPNLADYDTLLSGPCAGTA |
Ga0302201_101465983 | 3300028785 | Bog | KARAEPVDVGELARYDRPMPSLADYDTLLTAPCQGRA |
Ga0307503_101308904 | 3300028802 | Soil | PMPVDVGALARYDRPMPSVADYDTLLISSPCAGRA |
Ga0302218_101655631 | 3300028863 | Palsa | RYLLTEAGLHKTHPEPINVGELARYDRPPSNFADYDMLLRGQCVGNA |
Ga0302229_101882321 | 3300028879 | Palsa | LLTEAGLHKARPEPIDVGALARYDRPLPNLADYDTLLSGPCAGTAW |
Ga0302200_103901512 | 3300028909 | Bog | YLLNEAGLNKARAEPVDVGELARYDRPMPSLADYDTLLTAPCQGRA |
Ga0311358_109071191 | 3300029915 | Bog | GAVRYLLTEAGLNKARAEAIDVGELARYDRPMPSVADYDALLTAPCLGHA |
Ga0311363_107080711 | 3300029922 | Fen | EAGLHKARPVAVDVGALARYDRPMPDMADYDTLLVSTPCVGTA |
Ga0311328_106330971 | 3300029939 | Bog | AALHKARPVAVDVGALARYDRPMPDMADYDTLLVSTPCAGTA |
Ga0311365_114702111 | 3300029989 | Fen | YLLTEAGLHKARPELIDVGALARYDRPLPDLADYDTLLMGPCAGTA |
Ga0311338_109187362 | 3300030007 | Palsa | VRYLLTEAALQKERPNAIDVGELARYDRPMPTLAEYDVLLSGPCAGTA |
Ga0302270_106286812 | 3300030011 | Bog | EAGLSKVQPVPIDVGELARYDRPMPSVADYDALLTAPCLGHA |
Ga0311348_104701462 | 3300030019 | Fen | LHKPHPDPIDVGELARYDRPTPSLVDYDTLLLGPCVGSA |
Ga0311348_108052661 | 3300030019 | Fen | PDPVDVGELARYDQPLPDLADYDTLLLSTPCAGTA |
Ga0311344_110744532 | 3300030020 | Bog | GQPYTIDVGELARYDRPMPTTAEYDVLLFGPCAGTA |
Ga0302274_101868612 | 3300030041 | Bog | LLTEAGLHKGQPYAIDVGELARYDRPMPTMAEYDVLLSAPCVGTA |
Ga0311360_104570412 | 3300030339 | Bog | GLHKARPEPVDVGVLARYDRPPPSLADYDTLLSGPCAGTA |
Ga0268243_10271322 | 3300030510 | Soil | VRYLLSEAALHKALPMAVDVGELARYDRPMPSVADYDTLLLSSPCAGRA |
Ga0302275_104021462 | 3300030518 | Bog | YLLTEAGLHKARPVAVDVGALARYDRPMPDMADYDTLLVSTPCVGTA |
Ga0265760_100726341 | 3300031090 | Soil | ARAEPVDVGALARYDRPLPNLADYDTLLSGPCAGTA |
Ga0302323_1031425141 | 3300031232 | Fen | HTARPELIDVGALARYDRPLPDLADYDTLLMGPCAGTA |
Ga0272427_11500021 | 3300031454 | Rock | VAAVRYLLTEAGLHKAQPDPVDVGALARYDRPLPTTADYDVLLLSSPCVGTA |
Ga0272437_12689632 | 3300031472 | Rock | VRYLLTEAGLHKAQPDPVDVGALARYDRPLPTTADYDVLLL |
Ga0170818_1050362601 | 3300031474 | Forest Soil | RVPAAPIDVGELARYDRPLPSVADYDTLLLSTPCVGTA |
Ga0302320_110767251 | 3300031524 | Bog | EAGLHKARPIAVDVGALARYDRPMPDLADYDTLLVSTPCAGTA |
Ga0310887_104810591 | 3300031547 | Soil | RPATIDVGALARYDRPMPGVAEYDTLLVSSPCAGRA |
Ga0307474_102976531 | 3300031718 | Hardwood Forest Soil | KARAEPVDVGALARYDRPLPNLADYDTLLSGPCAGTA |
Ga0306917_101025295 | 3300031719 | Soil | TEASLQRAPVAPIDVGELARYDRPLPSVTDYDTLLRCTPCVGTA |
Ga0306925_107680842 | 3300031890 | Soil | PRPDPIDVGTLARYDRPMPDLGDYDTLLSGPCAGTA |
Ga0310884_107655832 | 3300031944 | Soil | KAQPMPIDVGALARYDRPMPSVADYDTLLVSSPCAGRA |
Ga0306926_117205401 | 3300031954 | Soil | TASALRKATPELIDVGELARYDRPIPTLADYDELLSARVA |
Ga0308176_126345421 | 3300031996 | Soil | RSTPVDIGELARYDRPMPSVADYDTLLLSGPCAGRA |
Ga0307471_1039474711 | 3300032180 | Hardwood Forest Soil | CDVAAVRYLLTEASLHKAHPAPIDVGALARYDRPLLDLADYDTLLSAPCAGTA |
Ga0306920_1008093453 | 3300032261 | Soil | TEASLQRAPAAPIDVGELARYDRPLPSVADYDTLLLSTPCAGTA |
Ga0334924_014727_1_120 | 3300033989 | Hypolithic Biocrust | HKARPAPVDVGELARYDRPVPGVADYDTLLLSGPCAGRA |
Ga0370489_0059857_17_166 | 3300034127 | Untreated Peat Soil | VRYLLTEAGLHKARPEPVNVGALARYDRSLPNLADYDTLLVSTPCAGTP |
Ga0370494_003029_3978_4142 | 3300034130 | Untreated Peat Soil | MIASAYSYLLTEAGLHKARPVAVDVGALARYDRPMPDMADYDTLLVSTPCVGTA |
Ga0370509_0208559_1_159 | 3300034159 | Untreated Peat Soil | VAAVRYRLAEAGLHKTPPVAVDVGALARYDRPMPSVADYDTLLHSSPCAGTA |
Ga0370503_0028980_1022_1162 | 3300034196 | Untreated Peat Soil | MLTEAGLHKARPIVVDVGALARYDRPMPDLADYDTLLVSTPCAGTA |
Ga0370503_0269374_507_617 | 3300034196 | Untreated Peat Soil | PPVAVDVGALARYDRPMPSVADYDTLLHSSPCAGTA |
Ga0370504_0036207_1117_1251 | 3300034349 | Untreated Peat Soil | LTEAGLHKARPELIDVGALVRYDRPLPDLADYDTLLMGPCAGTA |
Ga0370545_096836_2_136 | 3300034643 | Soil | TEASLQRAPATPIDVGELARYDRPLPSVADYDTLLVSTPCAGTA |
Ga0334935_161366_505_618 | 3300034781 | Biocrust | ARPAPVDVGELARYDRPVPGVADYDTLLLSGPCVGTA |
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