Metagenome Family F077977

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077977
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	45 residues
Representative Sequence	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGATYFHKPK
Number of Associated Samples	92
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	23.08 %
% of genes from short scaffolds (< 2000 bps)	83.76 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (30.769 % of family members)
Environment Ontology (ENVO)	Unclassified (44.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.829 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.36% β-sheet: 0.00% Coil/Unstructured: 61.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01464	SLT	14.53
PF13577	SnoaL_4	8.55
PF00313	CSD	3.42
PF04471	Mrr_cat	2.56
PF07045	DUF1330	2.56
PF01381	HTH_3	2.56
PF00589	Phage_integrase	1.71
PF13467	RHH_4	1.71
PF00561	Abhydrolase_1	0.85
PF05724	TPMT	0.85
PF01070	FMN_dh	0.85
PF03330	DPBB_1	0.85
PF13358	DDE_3	0.85
PF13751	DDE_Tnp_1_6	0.85
PF04828	GFA	0.85
PF04909	Amidohydro_2	0.85
PF00154	RecA	0.85
PF16576	HlyD_D23	0.85
PF00903	Glyoxalase	0.85
PF00155	Aminotran_1_2	0.85
PF00034	Cytochrom_C	0.85
PF07369	DUF1488	0.85
PF00582	Usp	0.85
PF13682	CZB	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	2.56
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.85
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.85
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.85
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.38 %
Unclassified	root	N/A	31.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.38 %
Unclassified	root	N/A	31.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.38 %
Unclassified	root	N/A	31.62 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.15 %
Unclassified	root	N/A	31.62 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.61 %
Unclassified	root	N/A	31.62 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.27 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35.04 %
Unclassified	root	N/A	31.62 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.69 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	4.27 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	4.27 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.62 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	4.27 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	4.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.42 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	2.56 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.62 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	4.27 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	4.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.42 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2.56 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.62 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	4.27 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.42 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	0.85 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.62 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	4.27 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.42 %
Rhizobium sp. CF142	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF142	0.85 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	0.85 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090004\|P1_DRAFT_NODE_82422_len_714_cov_16_130253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	764	Open in IMG/M
2140918008\|ConsensusfromContig316408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
2140918008\|ConsensusfromContig328051	Not Available	660	Open in IMG/M
2170459024\|GZTSFBX01DKI66	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300000313\|WSSedB1CaDRAFT_10090228	Not Available	580	Open in IMG/M
3300001394\|JGI20191J14862_1029533	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300001397\|JGI20177J14857_1018110	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300001423\|JGI20199J14953_1016959	Not Available	614	Open in IMG/M
3300002549\|JGI24130J36418_10051705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1072	Open in IMG/M
3300003369\|JGI24140J50213_10010388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3563	Open in IMG/M
3300003369\|JGI24140J50213_10062243	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300003861\|Ga0031654_10105255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	791	Open in IMG/M
3300004022\|Ga0055432_10168942	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005205\|Ga0068999_10073763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	643	Open in IMG/M
3300005213\|Ga0068998_10105358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	634	Open in IMG/M
3300005938\|Ga0066795_10137187	Not Available	729	Open in IMG/M
3300005947\|Ga0066794_10087152	Not Available	931	Open in IMG/M
3300005949\|Ga0066791_10074022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	678	Open in IMG/M
3300005980\|Ga0066798_10035023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1645	Open in IMG/M
3300005980\|Ga0066798_10167387	Not Available	607	Open in IMG/M
3300006052\|Ga0075029_100315147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1001	Open in IMG/M
3300006052\|Ga0075029_100323622	Not Available	988	Open in IMG/M
3300006055\|Ga0097691_1019046	All Organisms → cellular organisms → Bacteria	3023	Open in IMG/M
3300006055\|Ga0097691_1023504	All Organisms → cellular organisms → Bacteria	2593	Open in IMG/M
3300006354\|Ga0075021_10910032	Not Available	571	Open in IMG/M
3300006638\|Ga0075522_10189278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1046	Open in IMG/M
3300006638\|Ga0075522_10213825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	968	Open in IMG/M
3300006640\|Ga0075527_10020523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1725	Open in IMG/M
3300006640\|Ga0075527_10087066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	858	Open in IMG/M
3300006642\|Ga0075521_10460448	Not Available	621	Open in IMG/M
3300006795\|Ga0075520_1115057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF142	1205	Open in IMG/M
3300006795\|Ga0075520_1131407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1107	Open in IMG/M
3300006795\|Ga0075520_1134231	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1093	Open in IMG/M
3300006795\|Ga0075520_1136796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1080	Open in IMG/M
3300006949\|Ga0075528_10130911	Not Available	668	Open in IMG/M
3300006949\|Ga0075528_10215507	Not Available	522	Open in IMG/M
3300006950\|Ga0075524_10298177	Not Available	706	Open in IMG/M
3300007351\|Ga0104751_1076834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1430	Open in IMG/M
3300007740\|Ga0104326_112637	Not Available	1246	Open in IMG/M
3300009029\|Ga0066793_10486459	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300009091\|Ga0102851_10110604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2406	Open in IMG/M
3300009506\|Ga0118657_11357226	Not Available	846	Open in IMG/M
3300009649\|Ga0105855_1309641	Not Available	504	Open in IMG/M
3300009660\|Ga0105854_1315705	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300010366\|Ga0126379_11691296	Not Available	737	Open in IMG/M
3300010379\|Ga0136449_101790974	Not Available	919	Open in IMG/M
3300010397\|Ga0134124_10005809	All Organisms → cellular organisms → Bacteria → Proteobacteria	9912	Open in IMG/M
3300011992\|Ga0120146_1022019	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300012964\|Ga0153916_11482254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	754	Open in IMG/M
3300013503\|Ga0120127_10007693	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300014489\|Ga0182018_10166878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1249	Open in IMG/M
3300014490\|Ga0182010_10277617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300014501\|Ga0182024_10181557	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300017927\|Ga0187824_10297649	Not Available	570	Open in IMG/M
3300017944\|Ga0187786_10219346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735	Open in IMG/M
3300017959\|Ga0187779_10001789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13391	Open in IMG/M
3300017959\|Ga0187779_10871330	Not Available	618	Open in IMG/M
3300018029\|Ga0187787_10130375	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300018058\|Ga0187766_10237023	Not Available	1163	Open in IMG/M
3300018058\|Ga0187766_10679328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	709	Open in IMG/M
3300018064\|Ga0187773_10490846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	730	Open in IMG/M
3300019786\|Ga0182025_1136591	Not Available	1174	Open in IMG/M
3300022518\|Ga0224548_1042839	Not Available	502	Open in IMG/M
3300025146\|Ga0209322_10232392	Not Available	778	Open in IMG/M
3300025313\|Ga0209431_10361630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1126	Open in IMG/M
3300025313\|Ga0209431_10884009	Not Available	642	Open in IMG/M
3300025314\|Ga0209323_10051505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2824	Open in IMG/M
3300025325\|Ga0209341_10384816	Not Available	1139	Open in IMG/M
3300025327\|Ga0209751_10212784	Not Available	1652	Open in IMG/M
3300025457\|Ga0208850_1005830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	2570	Open in IMG/M
3300025481\|Ga0208079_1021680	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300025482\|Ga0208715_1010648	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300025482\|Ga0208715_1017790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1381	Open in IMG/M
3300025495\|Ga0207932_1006135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3840	Open in IMG/M
3300025495\|Ga0207932_1014024	All Organisms → cellular organisms → Bacteria	2318	Open in IMG/M
3300025504\|Ga0208356_1049730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300025505\|Ga0207929_1012461	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1606	Open in IMG/M
3300025509\|Ga0208848_1001132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5104	Open in IMG/M
3300025535\|Ga0207423_1073272	Not Available	616	Open in IMG/M
3300025544\|Ga0208078_1045423	Not Available	940	Open in IMG/M
3300025579\|Ga0207927_1100412	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300025604\|Ga0207930_1007279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3400	Open in IMG/M
3300025625\|Ga0208219_1037977	Not Available	1265	Open in IMG/M
3300025625\|Ga0208219_1050860	Not Available	1033	Open in IMG/M
3300025650\|Ga0209385_1015885	All Organisms → cellular organisms → Bacteria	3089	Open in IMG/M
3300025829\|Ga0209484_10197714	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300026272\|Ga0209913_1022850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1662	Open in IMG/M
3300026272\|Ga0209913_1028915	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300026291\|Ga0209890_10007785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4457	Open in IMG/M
3300027394\|Ga0209904_1004066	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300027815\|Ga0209726_10102049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1731	Open in IMG/M
3300027819\|Ga0209514_10146857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1270	Open in IMG/M
3300027819\|Ga0209514_10208125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	973	Open in IMG/M
3300027902\|Ga0209048_10028700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4739	Open in IMG/M
3300027902\|Ga0209048_10040489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3876	Open in IMG/M
3300027902\|Ga0209048_10546528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	777	Open in IMG/M
3300028800\|Ga0265338_10850471	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300031469\|Ga0170819_12266729	Not Available	627	Open in IMG/M
3300032770\|Ga0335085_11652592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300032782\|Ga0335082_10195495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1925	Open in IMG/M
3300032782\|Ga0335082_11145662	Not Available	644	Open in IMG/M
3300032828\|Ga0335080_10506867	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300032892\|Ga0335081_10890245	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300032893\|Ga0335069_11542870	Not Available	714	Open in IMG/M
3300032897\|Ga0335071_10284303	Not Available	1607	Open in IMG/M
3300032897\|Ga0335071_11342791	Not Available	660	Open in IMG/M
3300033004\|Ga0335084_11054438	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300033233\|Ga0334722_10845327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300033412\|Ga0310810_10180139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2416	Open in IMG/M
3300033433\|Ga0326726_11409137	Not Available	678	Open in IMG/M
3300033487\|Ga0316630_10320406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1204	Open in IMG/M
3300033887\|Ga0334790_003712	All Organisms → cellular organisms → Bacteria → Proteobacteria	10625	Open in IMG/M
3300033888\|Ga0334792_109412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	751	Open in IMG/M
3300034090\|Ga0326723_0053140	All Organisms → cellular organisms → Bacteria → Proteobacteria	1716	Open in IMG/M
3300034090\|Ga0326723_0200304	Not Available	884	Open in IMG/M
3300034125\|Ga0370484_0092878	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300034125\|Ga0370484_0191957	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.05%
Aquatic	Environmental → Aquatic	17.09%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.07%
Freshwater	Environmental → Aquatic → Freshwater	9.40%
Marine	Environmental → Aquatic → Marine	5.13%
Peat	Environmental → Terrestrial → Peat	5.13%
Sediment	Environmental → Aquatic → Sediment	2.56%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	29.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.13%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.13%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.42%
Loam	Environmental → Terrestrial → Soil → Loam	3.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.56%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.56%
Lake	Environmental → Aquatic → Freshwater → Lake	0.85%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	35.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.24%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	13.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.13%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.42%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.42%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.71%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.71%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	30.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.55%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	6.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	3.42%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.42%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	2.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	2.56%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.56%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.71%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.71%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.71%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.85%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.85%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Deep Subsurface Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090004	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000313	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental	Open in IMG/M
3300001423	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007351	Combined Assembly of Gp0115775, Gp0115815	Environmental	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300025146	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300026272	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027394	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_DRAFT_00046640	2088090004	Soil	MPTETAIIVAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK
Bog_all_C_02399000	2140918008	Soil	MPTETAIIIAGIVLPVAVLAVAMAWADFYTRNYRAPGSTYFHEPDSKK
Bog_all_C_03111070	2140918008	Soil	MPTETAIIIAGIVLVFAVFIVVLAWADFYTRNYRAPGAAYFDKPK
FD1_03818670	2170459024	Grass Soil	MPTQTAIIIAGVVLAFAAFAISLAWADFYSRNFRGPGNAK
WSSedB1CaDRAFT_100902281	3300000313	Wetland	MPAETVIVVAAIVAAFAFLAVPLAWADFYSRNVRTPGASYFDKRK*
JGI20191J14862_10295331	3300001394	Arctic Peat Soil	MPTETAIIVAGIVLAFAVFVVSLAWADFYTRNVRTPGAPYFNKSDSKE*
JGI20177J14857_10181101	3300001397	Arctic Peat Soil	MPTETAIIVAGIVLAFAVFVVSLAWADFYTRNVRTPGATY
JGI20199J14953_10169593	3300001423	Arctic Peat Soil	MPAETAIVVAGIAVVFAAFPIAPGWAAFYTRNVRTPGASYFDK*
JGI24130J36418_100517051	3300002549	Arctic Peat Soil	MPTETAIIVAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK*
JGI24140J50213_100103882	3300003369	Arctic Peat Soil	MPTETIVIVAGIVLAFAVFAVSLAWADFYTRGVRTPGATYFHEPSKE*
JGI24140J50213_100622431	3300003369	Arctic Peat Soil	MPTETAIIIAGIVLAFAVLAVSLAWASFYSRNYRAPGATYFNKPDSKE*
Ga0031654_101052552	3300003861	Freshwater Lake Sediment	MPTETAIAIVGIVLMFTVFAATLAWANYYTRNVRVPDAKYFHAPRAKE*
Ga0055432_101689421	3300004022	Natural And Restored Wetlands	MPTQTAIIIAGVVLAFAAFAISLARADFYSRNFRGPGSTK*
Ga0068999_100737631	3300005205	Natural And Restored Wetlands	MPTQTAIIIAAVVLAFAAFAISLARADFYSRNFRGPGTTK*
Ga0068998_101053581	3300005213	Natural And Restored Wetlands	MPTQTAIIIAGVVLAFAAFAISLAWADFYSRNFRGPGSTK*
Ga0066795_101371871	3300005938	Soil	MPTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK*
Ga0066794_100871521	3300005947	Soil	VAGIVLAFAVLAVSLAWASFYSRNYRAPGAPYFNKSDSKE*
Ga0066791_100740222	3300005949	Soil	MSTETAIIVAGIVLAVAVLAVSMAWAQYYTRNVRVPGATYFYKPK*
Ga0066798_100350233	3300005980	Soil	MLTETAIIIAGIVLMFAAFVVTLAWAVYYTRNFRAPGPTDFRAPSAKE*
Ga0066798_101673872	3300005980	Soil	AIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFQKPK*
Ga0075029_1003151472	3300006052	Watersheds	MPAETIITIAAIVLAFLVFAVSLAWADYYTRNVRTPGASYFDKPK*
Ga0075029_1003236222	3300006052	Watersheds	MPAETVIVVAAIIAAFALFAVPLAWADFYTRNVRTPGASYFRNPK*
Ga0097691_10190464	3300006055	Arctic Peat Soil	MPTETAIIVAGIVLAFAVLAVSLAWASFYSRNYRAPGAPYFNKSDSKE*
Ga0097691_10235043	3300006055	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFIVVLAWADFYTRNYRAPGAAYFDKPK*
Ga0075021_109100322	3300006354	Watersheds	MPTETAIIVAGIVLMFTVFVVTMAWADYYARNFRAPGATYFHESDAKK*
Ga0075522_101892783	3300006638	Arctic Peat Soil	MPTETAIIVAGIVLAFAALAVPLAWASYYTRNVRTPGAVYFPEPDSKK*
Ga0075522_102138252	3300006638	Arctic Peat Soil	MPTETAIIVAGIVLAFAVLAVSLAWAQYYTRNVRVPGATYFDEPNS*
Ga0075527_100205232	3300006640	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGATYFHKPK*
Ga0075527_100870661	3300006640	Arctic Peat Soil	MPTETAIIIAGIVLPVAVLAVAMAWADFYTRNYRAPGST
Ga0075521_104604482	3300006642	Arctic Peat Soil	MPTETAIIISGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK*
Ga0075520_11150571	3300006795	Arctic Peat Soil	MPTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRT
Ga0075520_11314072	3300006795	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGAAYFHEPDSKK*
Ga0075520_11342311	3300006795	Arctic Peat Soil	MPTETAIIVACIVLAFAVLAVCMAWAQYYTRNVRVPGATYFDTPK*
Ga0075520_11367963	3300006795	Arctic Peat Soil	MPTETAIIVACIVLAFAVLAVSMAWAQYYTRNVRVPGATYFDTPK*
Ga0075528_101309112	3300006949	Arctic Peat Soil	MPTETAIIVAGIVLLFAVLAVLAVALAWASYYTRNVRTPGATYY*
Ga0075528_102155071	3300006949	Arctic Peat Soil	MPTETAIVIAGTVLMFAVFLGALGWAVFYTRNVRVPGA
Ga0075524_102981772	3300006950	Arctic Peat Soil	MPTEVAIIVAGIVLAFAVPLAWASYYTRNVRTPGATYY*
Ga0104751_10768342	3300007351	Deep Subsurface Aquifer	MPIETAIIVAGVVLIFAAFAVSLAWAAFYTRNVRVPGATYFDTPDSAK*
Ga0104326_1126373	3300007740	Soil	MPTETIVVVAGIVLAFAVFAASLAWADFYTRGVHTPGATYFHEPSKQ*
Ga0066793_104864592	3300009029	Prmafrost Soil	MPTETAIIVAGIVLAFAALAVSPAWASYYTRNVRTPGATYY*
Ga0102851_101106046	3300009091	Freshwater Wetlands	MPTETAIIVAGIVVIFAAFPIALGWAAFYTRNVRTPGATYFDATDSRK*
Ga0118657_113572262	3300009506	Mangrove Sediment	VPTETAIVIAGIVLVFAAFAIVLAWADFYTRNIRAPGAAQFQGSESKK*
Ga0105855_13096411	3300009649	Permafrost Soil	MPTETAIIVAGIVLVFAAFIVALAWVDYYTRNYRAPGAVYFQKPNSK*
Ga0105854_13157052	3300009660	Permafrost Soil	VSALIFSRLNKGGLAMPTETVIVIAGIVLMFAVFAVTLVWADYYSRNFRAPGARYFHGPGAGD*
Ga0126379_116912962	3300010366	Tropical Forest Soil	MPTDTALIVAGVVLMFVVFAAALGWAAFYTRGVRVPGATYFDSK*
Ga0136449_1017909742	3300010379	Peatlands Soil	MPTETAVIIAGIVLMFAVFAVTLAWADYYTRNARVPGALYFHEPDSKQ*
Ga0134124_100058096	3300010397	Terrestrial Soil	MPTETAIIVGGIVVVFAIFPAILMWASAYTRDVRVPGATYFDEAKK*
Ga0120146_10220191	3300011992	Permafrost	MPTETAIIIAGIVLAFAVLAVSLAWASFYSRNYRALGATYFNKPDSKE*
Ga0153916_114822543	3300012964	Freshwater Wetlands	AIIVAGIVLAFVVFAASLAWADYYTSSVRRPGAGD*
Ga0120127_100076932	3300013503	Permafrost	MPTETIVVVAGIVLAFAVFAVSLAWADFYTRGVHTPGATYFHEPSKQ*
Ga0182018_101668781	3300014489	Palsa	VPTETVIIIAGIVLAFAVLAVPLAWADYYTRNVRVPGATYFNKPDSKQ*
Ga0182010_102776171	3300014490	Fen	MPTETAIMIAGIVLVFAVFAISLAWVDFFTRGFRAPGATYFDKKAE*
Ga0182024_101815573	3300014501	Permafrost	MPTETAIIVAGIVLAFAVLAVPLAWASFYSRNYRAPGATYFNKSDSKE*
Ga0187824_102976492	3300017927	Freshwater Sediment	MPTETAIIVAGIVLAFAVLAAAMAWAQYYTRNVRVPGATYFDTPK
Ga0187786_102193462	3300017944	Tropical Peatland	MPTQTAIIIAGVVLAFAAFAISLAWADFYTRNFRGPGSAK
Ga0187779_100017894	3300017959	Tropical Peatland	MPTETAVIVIGIALIFTVFAVSLAAADFYTRNVRTPEALYFRTPK
Ga0187779_108713302	3300017959	Tropical Peatland	MPTQTALIVAGILLVFAAFAVSLAWADFYSRNSRAHSAE
Ga0187787_101303752	3300018029	Tropical Peatland	MPTQTAIIIAGVVLAFAAFAISLAWADFYSRNFRGPGSAK
Ga0187766_102370231	3300018058	Tropical Peatland	TMPTETAVIVIGIALIFTVFAVSLAAADFYTRNVRTPEALYFRTPK
Ga0187766_106793281	3300018058	Tropical Peatland	MPTQTALIVAGILLVFAAFAVSLAWADFYSRNSRA
Ga0187773_104908462	3300018064	Tropical Peatland	MPTETAIVIAGIVVVFGIFALALAWASYYTRDYRAPGAAYQFPPSSRGAE
Ga0182025_11365913	3300019786	Permafrost	VPTETVIIIAGIVLAFAVLAVPLAWADYYTRNVRVPGATYFNKPDSKQ
Ga0224548_10428391	3300022518	Soil	KERRIAMPTETAIIVAGIVLAFAVLAVSLAWAQYYTRNVRVPGATYFDEPNS
Ga0209322_102323921	3300025146	Soil	MPTETVIIVAGIVLMFAAFAASLGWAAFYTRNVRVPGATYFDTSDTGK
Ga0209431_103616301	3300025313	Soil	MPTETVIIVAGIVLMFAVFAVSLGWAAFYTRNVRVPGATYFDTSDSGK
Ga0209431_108840091	3300025313	Soil	TVIIVAGIVLMFAVFAVSLGWAAFYTRNVRVPGATYFDTSDTGK
Ga0209323_100515051	3300025314	Soil	MPTETAIVITGIVLVFVVFAAALGWAAFYTRNVRTPGATYFDAADSRK
Ga0209341_103848164	3300025325	Soil	ITGIVLVFVVFAAALGWAAFYTRNVRTPGATYFDAADSRK
Ga0209751_102127841	3300025327	Soil	ETVIIVAGIVLMFAAFAASLGWAAFYTRNVRVPGATYFDTSDTGK
Ga0208850_10058301	3300025457	Arctic Peat Soil	MLTETAIIIAGIVLMFAAFVVTLAWAVYYTRNFRAPGPTDFRAPSAKE
Ga0208079_10216803	3300025481	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGATYFHKPK
Ga0208715_10106481	3300025482	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGATYFHK
Ga0208715_10177901	3300025482	Arctic Peat Soil	AGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK
Ga0207932_10061354	3300025495	Arctic Peat Soil	MPAETAIVVAGIAVVFAAFPIAPGWAAFYTRNVRTPGASYFDK
Ga0207932_10140242	3300025495	Arctic Peat Soil	MPTETAIIVAGIVLLFAVLAVALAWASYYTRNVRTPGATYY
Ga0208356_10497301	3300025504	Arctic Peat Soil	MPTETIVIVAGIVLAFAVFAVSLAWADFYTRSVRTPGATYFDEPSKQ
Ga0207929_10124614	3300025505	Arctic Peat Soil	MPTETAIIVAGIVLAFAVLAVSLAWAQYYTRNVRVPGATYFNKPDSKQ
Ga0208848_10011324	3300025509	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFYTRNVRTPGAAYFHEPDSKK
Ga0207423_10732722	3300025535	Natural And Restored Wetlands	MPTQTAIIIAGVVLAFAAFAISLARADFYSRNFRGPGSTK
Ga0208078_10454231	3300025544	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFIVALAWADFYTRNYRAPGAVYFDKPK
Ga0207927_11004121	3300025579	Arctic Peat Soil	MPTETAIIIAGIVLVFAVFAVSLAWADFCTRNVRTPGATYFH
Ga0207930_10072791	3300025604	Arctic Peat Soil	MPTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYF
Ga0208219_10379773	3300025625	Arctic Peat Soil	MPTETIVIVAGIVLAFAVFAVSLAWADFYTRGVRTPGATYFHEPSKQ
Ga0208219_10508602	3300025625	Arctic Peat Soil	MPTETAIIVAGIVLAFAVLAVSLAWAQYYTRNVRVPGATYFDEPNS
Ga0209385_10158856	3300025650	Arctic Peat Soil	MPTETAIIISGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK
Ga0209484_101977143	3300025829	Arctic Peat Soil	MPTETAIIISGIVLAFAVFVVSLAWADFYTRNVRTPG
Ga0209913_10228504	3300026272	Soil	PTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK
Ga0209913_10289151	3300026272	Soil	MPTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFQKPK
Ga0209890_100077852	3300026291	Soil	MPTETAIIVAGIVLVFAAFIVALAWVDYYTRNYRAPGAVYFQKPNSK
Ga0209904_10040663	3300027394	Thawing Permafrost	MPTETAIIIAGIVLAFAVFVVSLAWADFYTRNVRTPGATYFHKPK
Ga0209726_101020494	3300027815	Groundwater	MPTDTAIIVSGVVVMFVIFVAAMGWAAFYTRGVRTPGATYFDK
Ga0209514_101468571	3300027819	Groundwater	MPTETAIIVAGIVLMFAAFAVSLGWAAFYTRNVRVPGATYFDPPDSAK
Ga0209514_102081252	3300027819	Groundwater	MPTETAIVITGIVLVFVVFAAALGWAAFYTRNVRTPGANYFDAADSRK
Ga0209048_100287005	3300027902	Freshwater Lake Sediment	MPTETAIVIAGIVLMFIVFAAALAWADYYTRNVRVPDAKYFHAPRPKE
Ga0209048_100404893	3300027902	Freshwater Lake Sediment	MPTETAIAIVGIVLMFTVFAATLAWANYYTRNVRVPDAKYFHAPRAKE
Ga0209048_105465282	3300027902	Freshwater Lake Sediment	MPTETAIVITGIVLLFSVFVIVLAWADYYTRHVRTPGAQYFGASDPAE
Ga0265338_108504711	3300028800	Rhizosphere	VAGIILFFAVFAIALAWVDFYTRNVRAPGATYFHGSDSKK
Ga0170819_122667291	3300031469	Forest Soil	MPTETVIILAGIVVVFAVFGATLVWADYYTRNVRTPGATYFRDPAFNAPDR
Ga0335085_116525922	3300032770	Soil	MPTDTAVIVAGVVLIFVVFAAALSWAAFYTRGVRAPG
Ga0335082_101954952	3300032782	Soil	MPTETALIVAGVVLMFVVFAGAIGWAAFYSRGVRVPGATYFDGK
Ga0335082_111456622	3300032782	Soil	MPTETAIIVAGIVLMFAAFAVALASIDYYARDFRAPGATYFHEPDAKE
Ga0335080_105068672	3300032828	Soil	MPTEAAIIVIGIVLIFTVFAVSLATADFYTRNVRAPKAMYFRASK
Ga0335081_108902453	3300032892	Soil	MPTDVAIIVVGVVAVFAVFAGGLGWAAFYTRGVRTPGAAYFDGK
Ga0335069_115428701	3300032893	Soil	NRGRLAMPTETAIIVAGIVLMFAAFAVALASIDYYARDFRAPGATYFHEPDAKE
Ga0335071_102843033	3300032897	Soil	MPTETAIIVAGIVVVFIVFAVVLAWADYQTRNVRVPNATYFDNSKE
Ga0335071_113427912	3300032897	Soil	MPTETAIIVAGIVLMFAAFAVALASIDYYARDFRAPGATYFHEPDARE
Ga0335084_110544381	3300033004	Soil	RGEPMPTEIAVIVTGIVLVFVVFAAALGWAAFYTRGVRTPGATYFDNVK
Ga0334722_108453272	3300033233	Sediment	MPTETVIFIASVVLMFAVFAISLGWATFYTRNVRTPGASYFDK
Ga0310810_101801393	3300033412	Soil	MPTQTAIIVAGVVLTFSAFAISLAWADFYTRGIRAPGSGE
Ga0326726_114091371	3300033433	Peat Soil	MPTETAIIVAGIVLAFGSFAVVLAWADYYTWNSRIPGATYFKESNAKE
Ga0316630_103204063	3300033487	Soil	MPTETAIIVAGIVVIFAAFPIALGWAAFYTRNVRTPGATYFDATDSRK
Ga0334790_003712_942_1088	3300033887	Soil	MPTETAIIVAGIVLAFAVLAVSLAWASFYSRNYRAPGATYFNKSDSKE
Ga0334792_109412_1_135	3300033888	Soil	VPTETVIIIAGIVLAFAVLAVPLAWADYYTRNVRVPGATYFNKPD
Ga0326723_0053140_1389_1511	3300034090	Peat Soil	MPTQTAIIIAGVVLAFAAFAISLAWADFYSRNFRGPGSTK
Ga0326723_0200304_428_574	3300034090	Peat Soil	MPTETAIIVAGIVLVFTVFAVTLAWTDYYARNFRAPGGTYFQESDARE
Ga0370484_0092878_2_121	3300034125	Untreated Peat Soil	MPTETAIIVAGIVLAFAVFVVSLAGADFYTRNVRTPGATY
Ga0370484_0191957_291_437	3300034125	Untreated Peat Soil	MPTETPIIVAGIAVIFAAFPIAPGWAAFYTRNVRTPGASYFDAADSGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077977

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences