NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072944

Metagenome / Metatranscriptome Family F072944

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072944
Family Type Metagenome / Metatranscriptome
Number of Sequences 120
Average Sequence Length 57 residues
Representative Sequence MNKFSKLLNKIKSTESYTRDMVLKFLPEPSHELNILQKNYQALYTPDKLVMHLT
Number of Associated Samples 80
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 40.17 %
% of genes near scaffold ends (potentially truncated) 61.67 %
% of genes from short scaffolds (< 2000 bps) 97.50 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.167 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(67.500 % of family members)
Environment Ontology (ENVO) Unclassified
(92.500 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(90.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.32%    β-sheet: 0.00%    Coil/Unstructured: 42.68%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.17 %
All OrganismsrootAll Organisms0.83 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005615|Ga0070702_101025973Not Available655Open in IMG/M
3300005617|Ga0068859_103101821Not Available507Open in IMG/M
3300005841|Ga0068863_102429259Not Available533Open in IMG/M
3300009972|Ga0105137_110120Not Available517Open in IMG/M
3300009972|Ga0105137_110987Not Available501Open in IMG/M
3300009973|Ga0105136_110031Not Available576Open in IMG/M
3300009975|Ga0105129_109358Not Available645Open in IMG/M
3300009977|Ga0105141_126448Not Available514Open in IMG/M
3300009980|Ga0105135_107143Not Available788Open in IMG/M
3300009981|Ga0105133_128267Not Available525Open in IMG/M
3300009992|Ga0105120_1040003Not Available577Open in IMG/M
3300009995|Ga0105139_1099243Not Available559Open in IMG/M
3300010371|Ga0134125_12689870Not Available541Open in IMG/M
3300010371|Ga0134125_12708981Not Available539Open in IMG/M
3300010397|Ga0134124_11642732Not Available674Open in IMG/M
3300010403|Ga0134123_13518373Not Available507Open in IMG/M
3300014968|Ga0157379_12007275Not Available572Open in IMG/M
3300014968|Ga0157379_12502538Not Available516Open in IMG/M
3300015270|Ga0182183_1078519Not Available536Open in IMG/M
3300015278|Ga0182099_1055224Not Available548Open in IMG/M
3300015280|Ga0182100_1089110Not Available524Open in IMG/M
3300015284|Ga0182101_1028219Not Available762Open in IMG/M
3300015290|Ga0182105_1056932Not Available631Open in IMG/M
3300015290|Ga0182105_1059301Not Available623Open in IMG/M
3300015290|Ga0182105_1064882Not Available604Open in IMG/M
3300015293|Ga0182103_1021285Not Available820Open in IMG/M
3300015293|Ga0182103_1068349Not Available580Open in IMG/M
3300015293|Ga0182103_1076287Not Available559Open in IMG/M
3300015297|Ga0182104_1036181Not Available760Open in IMG/M
3300015297|Ga0182104_1072350Not Available605Open in IMG/M
3300015297|Ga0182104_1101730Not Available536Open in IMG/M
3300015301|Ga0182184_1038811Not Available696Open in IMG/M
3300015301|Ga0182184_1048538Not Available646Open in IMG/M
3300015309|Ga0182098_1042727Not Available732Open in IMG/M
3300015309|Ga0182098_1057117Not Available667Open in IMG/M
3300015309|Ga0182098_1112744Not Available527Open in IMG/M
3300015310|Ga0182162_1055467All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli686Open in IMG/M
3300015310|Ga0182162_1127622Not Available506Open in IMG/M
3300015315|Ga0182120_1076009Not Available636Open in IMG/M
3300015317|Ga0182136_1108588Not Available558Open in IMG/M
3300015319|Ga0182130_1020400Not Available953Open in IMG/M
3300015319|Ga0182130_1066887Not Available654Open in IMG/M
3300015324|Ga0182134_1046579Not Available774Open in IMG/M
3300015324|Ga0182134_1107218Not Available572Open in IMG/M
3300015324|Ga0182134_1116673Not Available553Open in IMG/M
3300015325|Ga0182148_1096293Not Available592Open in IMG/M
3300015326|Ga0182166_1071651Not Available656Open in IMG/M
3300015328|Ga0182153_1016709Not Available1076Open in IMG/M
3300015329|Ga0182135_1058459Not Available730Open in IMG/M
3300015329|Ga0182135_1085668Not Available635Open in IMG/M
3300015329|Ga0182135_1103340Not Available592Open in IMG/M
3300015331|Ga0182131_1038264Not Available850Open in IMG/M
3300015331|Ga0182131_1147391Not Available515Open in IMG/M
3300015332|Ga0182117_1114413Not Available597Open in IMG/M
3300015332|Ga0182117_1126133Not Available572Open in IMG/M
3300015333|Ga0182147_1103170Not Available618Open in IMG/M
3300015334|Ga0182132_1064597Not Available741Open in IMG/M
3300015334|Ga0182132_1119265Not Available584Open in IMG/M
3300015334|Ga0182132_1122102Not Available578Open in IMG/M
3300015335|Ga0182116_1053713Not Available823Open in IMG/M
3300015335|Ga0182116_1127343Not Available586Open in IMG/M
3300015336|Ga0182150_1102683Not Available612Open in IMG/M
3300015337|Ga0182151_1098867Not Available621Open in IMG/M
3300015338|Ga0182137_1127633Not Available583Open in IMG/M
3300015339|Ga0182149_1081889Not Available685Open in IMG/M
3300015340|Ga0182133_1078618Not Available731Open in IMG/M
3300015340|Ga0182133_1172902Not Available526Open in IMG/M
3300015340|Ga0182133_1174326Not Available525Open in IMG/M
3300015349|Ga0182185_1173597Not Available647Open in IMG/M
3300015349|Ga0182185_1277842Not Available511Open in IMG/M
3300015349|Ga0182185_1287495Not Available502Open in IMG/M
3300015350|Ga0182163_1273159Not Available529Open in IMG/M
3300015350|Ga0182163_1281406Not Available521Open in IMG/M
3300015352|Ga0182169_1190876Not Available670Open in IMG/M
3300015353|Ga0182179_1105288Not Available848Open in IMG/M
3300015353|Ga0182179_1222566Not Available605Open in IMG/M
3300015354|Ga0182167_1224350Not Available683Open in IMG/M
3300015354|Ga0182167_1294712Not Available577Open in IMG/M
3300015354|Ga0182167_1348513Not Available518Open in IMG/M
3300017414|Ga0182195_1103337Not Available682Open in IMG/M
3300017414|Ga0182195_1159345Not Available576Open in IMG/M
3300017422|Ga0182201_1114291Not Available546Open in IMG/M
3300017432|Ga0182196_1113724Not Available562Open in IMG/M
3300017432|Ga0182196_1127091Not Available541Open in IMG/M
3300017435|Ga0182194_1043206Not Available804Open in IMG/M
3300017440|Ga0182214_1081972Not Available673Open in IMG/M
3300017445|Ga0182198_1138097Not Available586Open in IMG/M
3300017445|Ga0182198_1140766Not Available582Open in IMG/M
3300017446|Ga0182217_1153380Not Available542Open in IMG/M
3300017447|Ga0182215_1122404Not Available589Open in IMG/M
3300017447|Ga0182215_1141686Not Available552Open in IMG/M
3300017692|Ga0182210_1104033Not Available613Open in IMG/M
3300020023|Ga0182178_1005465Not Available820Open in IMG/M
3300028049|Ga0268322_1033090Not Available606Open in IMG/M
3300028051|Ga0268344_1012457Not Available633Open in IMG/M
3300028056|Ga0268330_1021393Not Available732Open in IMG/M
3300028056|Ga0268330_1029147Not Available661Open in IMG/M
3300028061|Ga0268314_1049373Not Available521Open in IMG/M
3300028140|Ga0268334_1009931Not Available626Open in IMG/M
3300028151|Ga0268308_1024421Not Available560Open in IMG/M
3300028153|Ga0268320_1016943Not Available600Open in IMG/M
3300028154|Ga0268341_1013031Not Available663Open in IMG/M
3300028154|Ga0268341_1026734Not Available533Open in IMG/M
3300028256|Ga0268304_1005833Not Available683Open in IMG/M
3300028467|Ga0268333_1009107Not Available576Open in IMG/M
3300028469|Ga0268337_1013343Not Available568Open in IMG/M
3300028470|Ga0268307_1020146Not Available538Open in IMG/M
3300028470|Ga0268307_1021209Not Available530Open in IMG/M
3300028472|Ga0268315_1024481Not Available524Open in IMG/M
3300028473|Ga0268319_1015473Not Available580Open in IMG/M
3300028474|Ga0268331_1010750Not Available677Open in IMG/M
3300028475|Ga0268327_1026528Not Available509Open in IMG/M
3300028476|Ga0268329_1021231Not Available558Open in IMG/M
3300028477|Ga0268309_1005015Not Available761Open in IMG/M
3300032689|Ga0214497_1026324Not Available1227Open in IMG/M
3300032758|Ga0314746_1152397Not Available514Open in IMG/M
3300032918|Ga0314726_125939Not Available653Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere67.50%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere17.50%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated7.50%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.67%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300009972Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaGHost-AssociatedOpen in IMG/M
3300009973Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaGHost-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009977Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009992Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017446Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017692Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028051Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028140Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028256Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028467Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028469Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028470Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028473Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028475Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032689Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032758Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032918Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070702_10102597313300005615Corn, Switchgrass And Miscanthus RhizosphereMNKFSKPLSKIKSTESYTRDMVLKFLPEPSHELNISRKNYQPLYQPDKLVMNL
Ga0068859_10310182113300005617Switchgrass RhizosphereISKPLTKINSTESYTRNMVFKFLPEPSHEICILQKNYQALYSQDKLVMLLT*
Ga0068863_10242925923300005841Switchgrass RhizosphereFIHLYSRGDKKNKFSKLLTKINFTESFTRDMVLTFLPEPTNEPNILQKIFQDLSQYDKLVMQLT*
Ga0105137_11012013300009972Switchgrass AssociatedILYTYTAGVTKKHKNSKPLKKINFLESYTRNMVLKFLPEPNHELSILQKIFQDLSQHYKLVMQLT*
Ga0105137_11098713300009972Switchgrass AssociatedYSRGDKKNKNSKPLTKINSTESFTKDLVLKFLPETIHELRILQKNYQALYPPDNLVMRLIYHELA*
Ga0105136_11003113300009973Switchgrass AssociatedSYIRGDKMNKISKLLTKIKSIESYTRNMVLKFLPEPSHELKILHKNYQALYTPDKLVTHLT*
Ga0105129_10935813300009975Switchgrass AssociatedMNKFSKLLNKIKSTENYTRDIVLKVLPEPSHKLNIFPKNYQALYQPYKLVMHLT*
Ga0105141_12644813300009977Switchgrass AssociatedYSRGDKKNKNRKPLTKINSTKSYTRNMVLKFLPKPNHEINILQKNYQALYYYNKLVMQLT
Ga0105135_10714323300009980Switchgrass AssociatedMNKFSKLLNKINSTESYTRDMVLKFLPEPSNELKIFPKNYQALYQPDKLVMHLT*
Ga0105133_12826713300009981Switchgrass AssociatedMKNFSKLLTKIKSTESYTGDMVLNFLPELNHEIRILQKNYQALYPPDKLVMQLT*
Ga0105120_104000313300009992Switchgrass AssociatedMNKISKPLTKIKSTESYTRDMVLKFLPEPIHELNILQKNYQALCQHDKLVMQLT*
Ga0105139_109924313300009995Switchgrass AssociatedVTKRIKTADHLTKINSPESCTRDMILKFLPEPIHELNILQKNYHALYPPDILAMQLT*
Ga0134125_1268987013300010371Terrestrial SoilNSKPLTKINSTESFTRDMVLKFLPEPNHELNILQKIFQYLTQHDKLVMQLY*
Ga0134125_1270898113300010371Terrestrial SoilMNKFSKLLNKINSTESYTRDMVLKFIPEPSHEISILHKNYQALYPPDKLVMQLIQHELA*
Ga0134124_1164273213300010397Terrestrial SoilMNKFSKLLNKIKSTESYTRDMVLKFLPEPSHELNIIHKNYQASYQQDKLVMHLTYHELA*
Ga0134123_1351837313300010403Terrestrial SoilFIHLYSRGDKKNTFSKLLTKINSTESYTRDMVNKFLPEPIHELNILQKNYKALYHYDKLVMQLILT*
Ga0157379_1200727513300014968Switchgrass RhizosphereKDKISKLLTKIKTTESYTRDMVLNFLPELSNEIKILQKNYQALYHQFKLVMQLT*
Ga0157379_1250253813300014968Switchgrass RhizosphereMNKFSKLLNKIKSTESYTRDMVLKFLPEPSNEIDILRKNYQALYHQDKLIMHLTYHDLA*
Ga0182183_107851913300015270Switchgrass PhyllosphereMNKFSKLLTKINSTESYTRDMVLKFLPEPSHDLNIFPKNYQALYQPDKLVMHLT*
Ga0182099_105522413300015278Switchgrass PhyllosphereKINSTESYTRDMVLKFLPEPSHELNILPKNYQALYQQDKLVMHLIYHELA*
Ga0182100_108911013300015280Switchgrass PhyllosphereKFSNPLTKINSTESHTRNMVLKFLPEPSHEINVLQKNYQVLYTQDKLVMLLT*
Ga0182101_102821913300015284Switchgrass PhyllosphereVIFPDFIYLYITGDKMNKFSKILNKINSTVSYTRDMVLKFLPKPIHKLKIFHKNYQALYHQDKLVMQLTYHELA*
Ga0182105_105693213300015290Switchgrass PhyllosphereMNKFSKLLNKIKSTESYTGDMVLKFLPEPSHKLNIFPKNYQALYHYDKLVMQLT*
Ga0182105_105930113300015290Switchgrass PhyllosphereGDKKNKNSKPLTRINSTESFTWDMVLKFLPESTHELNILQKNYRALSPPDKLVMHLT*
Ga0182105_106488213300015290Switchgrass PhyllosphereLYSRGDKMNKFSKRLNKINSIESYTRDMVLKFLPEPSHELNMSHKNYQALYPQDINSYAFNLS*
Ga0182103_102128523300015293Switchgrass PhyllospherePDFIHLYSKGDKKNKISKPLTKINSTESYTRNMVLKFLPEPSHEMSVLQKNHQALYTLDKLVMLLT*
Ga0182103_106834913300015293Switchgrass PhyllosphereLYSRGDKKNKNSKPLTKFKSTESCTRDMVLKFLPKPNHELNILQKNYQALYPLDKLVMQLI*
Ga0182103_107628713300015293Switchgrass PhyllosphereMNKFSKLLNKINSTEIYTRDMVLKFLPEPSNELNIFHKNYQASYLPDKLVMHLT*
Ga0182104_103618113300015297Switchgrass PhyllosphereMNKFSKLLNKINSRKSYTRDMVLKFLPKRSHELTILQKTYQALYLPDKLVMHLTLHELA*
Ga0182104_107235013300015297Switchgrass PhyllosphereMNKISKLLNKINFTESYTRDMVLKFLPEPSHELNMLQKNYQALYQPDKLVMHLT*
Ga0182104_110173013300015297Switchgrass PhyllosphereNEKISKLLTKIKSIESYTMDMVLKFLPEPSHELNILQKNYQALYPPDKLVMHLT*
Ga0182184_103881113300015301Switchgrass PhyllosphereMNKFSKPLTKINSIESYTRDIVLKFLPEPKHDLNLLQKNYQALYQTDKLVIRLT*
Ga0182184_104853823300015301Switchgrass PhyllosphereNKFSKLSNKINSTESYTRDMVLKFLPEPSHELIIFDKHYQALYQQYKLVMHLT*
Ga0182098_104272713300015309Switchgrass PhyllosphereKFSKPLIKINFIESYTRDMVLTFLPKPIHKLKIFQKNYQALYHQDKLVMQLN*
Ga0182098_105711713300015309Switchgrass PhyllosphereNKNNKPLKKINSTESYTRNMVLKFLPEPNNEINILQKNYQALYQPDKLVMHLT*
Ga0182098_111274413300015309Switchgrass PhyllosphereMNKFSKLLNKIKSTESYTRDMVLKFLPEPSHELNILQKNYQALYTPDKLVMHLT*
Ga0182162_105546713300015310Switchgrass PhyllosphereSKPLTKINSTESYTRNMVLKFLPEPNHEINILHEKYQALYHYYKLVMQLT*
Ga0182162_112762213300015310Switchgrass PhyllosphereMNKFSKLLNKINSIKSYTRDMVLKFLLQPSHQINIFHKNYEASYQQDKLVMHLHYHEIA*
Ga0182120_107600913300015315Switchgrass PhyllosphereKISKLLTKINSTESFTWDMVLKFLPEPIHELNILQKIFQDLTQHDKLIKQLY*
Ga0182136_110858813300015317Switchgrass PhyllosphereMNKFSKLLNKINSTESYTRVMVLKLLPEPSHELNIFYKNYQALYQPDKLVMHLN*
Ga0182130_102040023300015319Switchgrass PhyllosphereMNKFSKLLNKINSTESYTRDMALKFLPEPSHEIKIFQKNYQGFCQPDKLVMHLT*
Ga0182130_106688713300015319Switchgrass PhyllosphereMNKFSKPLTKINSTESYTRDMVLNFLPDPSHKLNIFLKNYQALYHQDKLVMQLTYHELA*
Ga0182134_104657913300015324Switchgrass PhyllosphereMNNFSKPLTKINSTESYTRYIALKFLPEPSHKLNIFHKNYQALYHQDKSVMQLTYHELA*
Ga0182134_110721823300015324Switchgrass PhyllosphereMNKFTKLLNKINSTESYTRDMVLKFLPEPNHELNLLQKNYQTLYHYDKLVMKLT*
Ga0182134_111667313300015324Switchgrass PhyllosphereNRGDKKNTISKPLTKINSPESCTMDMVLKFLPEPSKELSILQKNYQSLYPPDKLVIKLI*
Ga0182148_108899713300015325Switchgrass PhyllosphereLTKIDSPESCTMDMVLKFLPEPSKELNILQKNYQALYSPDKLVMLLT*
Ga0182148_109629313300015325Switchgrass PhyllosphereNKISKLLNKINSTKIYTRDMVLKFLPEPSHEPNILQKKNYQALHQPDKLVMHLT*
Ga0182166_107165113300015326Switchgrass PhyllosphereMNKFSKLLNKINSTESYTRDMVFKFLPEPSHKLNIFHKNYQALYRQDKLVMQLTYHELA*
Ga0182153_101670913300015328Switchgrass PhyllosphereMNKFSKPLTKINSTESYTRDTVLKFLPEPSNELNILQKNYQALYSPDKLVMLLT*
Ga0182135_105845913300015329Switchgrass PhyllosphereINSIESYTSDMVLIFLPEPSNEIDILCKNYQALYHQDKLIMHLTYHDLA*
Ga0182135_108566813300015329Switchgrass PhyllosphereMNKFSKPLTKINSTESYTRDMVLKFLPEPSNNLNIFHKNYQALYHQDKLVMQLTYHELA*
Ga0182135_110334013300015329Switchgrass PhyllosphereMNKFSKILNKINSTVSYTRDMVLKFLPESSHELNIFQKNYQALYPPDKLVMHLT*
Ga0182131_103826413300015331Switchgrass PhyllosphereINSTESYTRDMVLKFLPEPSHEPNILQKKNYQALHQPDKLVMHLT*
Ga0182131_114739113300015331Switchgrass PhyllosphereMNKLSKLLNKINSTESYIRNMVLKFLPEPSYELNILQKNYQALYHQDKLVMQLTYHELA*
Ga0182117_111441313300015332Switchgrass PhyllosphereNKNSKPLTKINSTESCTRDMALKFLPEPNHELNILQKNYQALYPLDKLVMQLI*
Ga0182117_112613313300015332Switchgrass PhyllosphereNISKPLTKINSTESYTRNMVLKFLPEPSHEICILQKNYQALYSQDKLVMLLT*
Ga0182147_110317013300015333Switchgrass PhyllosphereSKLLNKINSIKSYPRDMVLKFLLQPSHQINIFHKNYEASYQQDKLVMHLNYHELA*
Ga0182132_106459713300015334Switchgrass PhyllosphereNKIKSTESYTRDMVLKFLPEPSHELKIFPKNYQALYQPDKLVMHLT*
Ga0182132_111926513300015334Switchgrass PhyllosphereKKNKFSKLSTKIKSTESYTRDMVLKFLPEPNNKLNIFHKNYQALYHYDKLVMQLTYHELA
Ga0182132_112210213300015334Switchgrass PhyllosphereMNKFSKILNKINSTVSYTRDMVLKFLPESSHELNIFQKNYQALYHQDNLVMQLTYHELA*
Ga0182116_105371313300015335Switchgrass PhyllosphereEIFPDFIHLYSRGDKMNKFSKPLTKINSTESYTRDMVLKFLPDPIHKLEILQKNYQDLYPPDKLVMHLT*
Ga0182116_112734313300015335Switchgrass PhyllosphereSRGDKKNKINKPLTKINSTESYTRNMVLKFLPEPSHEIKILYKNYQALYSPDKLVMHLT*
Ga0182150_110268323300015336Switchgrass PhyllosphereYSRGDKQNKNNKPLTKINSTESYTRNMVLKFLPEPIHKLTILQKNDQALYPPDKLVMQLI
Ga0182151_109886713300015337Switchgrass PhyllosphereMNKFSKLLNKVNSTESYTRDMVLKFLPEPRHQLKLLHKNYQSLYPPDKLVMHLN*
Ga0182137_112763313300015338Switchgrass PhyllosphereMNKFSKQLNKINSTESYTRDIVLKFLPEPIRKLNIFQKNYQALYHQDKLVIQLTYHELA
Ga0182149_108188913300015339Switchgrass PhyllosphereNKNSKPLTRINSTESFTRDMVLKFLPEPNNEIIIHYKKLSSLYSQDKLVMQLTQHELA*
Ga0182133_107861813300015340Switchgrass PhyllosphereMNKFSKPLTKINSTESYTRDMVLKFLPEPNHELEILHKNYQALYHYDKLVM*
Ga0182133_117290213300015340Switchgrass PhyllosphereISKLLTKIKSTESYTRDMVLKFLPEPSHEISILQKNYQVLYPPDKLVMQLT*
Ga0182133_117432613300015340Switchgrass PhyllosphereMNKFSKLLNKINSTESYTRDMVLKLLPEPSHELNIFYKIYQALYQPYKLVMHLT*
Ga0182185_117359713300015349Switchgrass PhyllosphereMNKFSKPFTKINSTESYTRDMVLKFLPEPSHEIDILQKNYQTLYTPDKLVMHLS*
Ga0182185_127784213300015349Switchgrass PhyllosphereRGDKMNKFSKPLTKINSTESYARDMVLKFLPKPSNEINILQKHYQGLYPPDKLVMQLT*
Ga0182185_128749523300015349Switchgrass PhyllosphereLTKINSTESYTRDMVLKFLPDPIHKLEILQKNYQDLYPPDKLVMHLT*
Ga0182163_127315913300015350Switchgrass PhyllosphereFIHLYSRGDKKNKFGKPLTKINSTESYTGDMILKFLPEPIHKLNIFHKNYKALYPPDKLVVLLT*
Ga0182163_128140613300015350Switchgrass PhyllosphereTYLYSRSDKMNKISKLLTKIKSIESYTMYMVLKFLPESSHELNILQKNYQALYPLDKLVMQLT*
Ga0182169_119087623300015352Switchgrass PhyllosphereYTAEVTKKNKFNKILNKINSTESYTRDVVLKFLPEPKHELNILQKNYQALYPPDKLVMHLT*
Ga0182179_110528813300015353Switchgrass PhyllosphereMNNFSKPLTKINSTESYSRDMVLKFLPEPSHKLNIFQKNCQALYHQDKLVMPLNYHELA*
Ga0182179_122256613300015353Switchgrass PhyllosphereMNKFSKPLNMIKSTESYTRDMVLKFLPEPSHKLNIFHKNYQASYHQDKLVMQLTYHELA*
Ga0182167_122435013300015354Switchgrass PhyllosphereIRGDKMNKFSKLLTKINSTESYTRDMVLKFLPEPSHKLNIFHKNYQASYHYDKLVMQLTYHELA*
Ga0182167_129471213300015354Switchgrass PhyllosphereRGDKNNKNSKPLTKINSTESFTRGMVLKFLPEPNHELNILHKIFQDLNQHDKLVMQLYKHELA*
Ga0182167_134851313300015354Switchgrass PhyllosphereYLYIRGDKMNKFSKLLNKINSTESYTRVMVLKLLPEPSHELNIFYKNYQALYQPYKLVIHLT*
Ga0182199_111081713300017412Switchgrass PhyllosphereRLYNXGDKKNKNSKFLNKINSTESFTRVMALKFFPEANHELNILHKIFRDLKQYDKLVMQLT
Ga0182195_110333713300017414Switchgrass PhyllosphereRGDKKNKISKPLTKINSPESCTMDMVLKFLPEPSKELNILQKNYQALYSPDKLVMLLT
Ga0182195_115934513300017414Switchgrass PhyllosphereHLYSRGDKKNKFSKLLTKINSTESYIRDMVLKFLLEPIHKLNILQKNYQALYPPDKLVMQLI
Ga0182201_111429113300017422Switchgrass PhyllosphereYLYIGGDKKNKISQPLTKINSTESCTRDIVLKFLPEPNHELSLFQKNYQALYRQFKLVMQLT
Ga0182196_111372413300017432Switchgrass PhyllosphereLTKINSTESYTRDMVLKFLPEPSHKLNIFQKNYQALYHQDNLVMQLTYHELA
Ga0182196_112709113300017432Switchgrass PhyllosphereMNKFSKPLTKINSTESYTRNMVLKFLPEANNEINILQKNFQALYHYYKLVMQLT
Ga0182194_104320623300017435Switchgrass PhyllosphereKPLTKINSTESFTRDMVLKFLPEPNNEIIIHYKKLSSLYSQDKLVMQLTQHELA
Ga0182214_108197213300017440Switchgrass PhyllosphereLLTKIKSTESYTRDIVLKFLPEPSHEINILHKNYQALYPPDKLVMQLT
Ga0182198_113809713300017445Switchgrass PhyllosphereYSRGDKMNKFSKLLNKINSTESYTRYMVLNFLPEPCNEINIFHKNYQALNHQDKLVMQLTYHELA
Ga0182198_114076623300017445Switchgrass PhyllosphereMNNFSKPLTKIKSTESFTRDMVLKFLPDPIHELNILQKNYQALYQHDKLVMHLT
Ga0182217_115338023300017446Switchgrass PhyllosphereMNKNSKLLTKIKSTEIYTRDMVLKFLPGPSHELNIICKNYQASHQQDKLVMHLTYHELA
Ga0182215_112240413300017447Switchgrass PhyllosphereRGDKMNKISELLTMIKSTESYTRDMVLKFLPEPSHELNILQNNYQALYLPYKLVMHLT
Ga0182215_114168613300017447Switchgrass PhyllosphereNKISKLLTKIKSTESYTRDIVLKFLPEPSHKLNIFHKNYQALYHQDKLVIQLTYHELA
Ga0182215_115324113300017447Switchgrass PhyllosphereHLYSRGDKMNNFSKPLNKINSIESYTRDMVLNLLPEPSHELNIFHKNYQALY
Ga0182210_110403313300017692Switchgrass PhyllosphereMNKFSKLLNKINSTEGYTRDMVLKFLPEPINDIKILQKNYQALYSSEKLVMQLT
Ga0182178_100546513300020023Switchgrass PhyllosphereMNKFSKLLTKINSTESYTRDMVLKFLPEPSHKLNIFHKNYQALYHQDKLVMQLT
Ga0268322_103309013300028049PhyllosphereMNKISKLLTKIKSTESYTRDMLLKFLPEPIHELNILQKNYQALYQQDKISY
Ga0268344_101245713300028051PhyllosphereIKINSTESYTGDMILKFLPEPIHKLNIFHKNYQALYPPDKLVMLLT
Ga0268330_102139313300028056PhyllosphereMNNISKLLNKINSIESYFRYMVLKFLLEFSHELKILPKNYQALYHQDKLVMHLIYHELA
Ga0268330_102914713300028056PhyllosphereLTKINSTESYTRNMVLKFLPDPSHEICILQKNYQALYSLDKLVMLLT
Ga0268314_104937313300028061PhyllosphereMNKISKLLTKIKSTESYTRDMVLKFLPEPSHKLNIFHKNYQALYHQDKLVIQLTYHELA
Ga0268334_100993113300028140PhyllosphereMNKFSKLLNKIKSTESYTRDMVLKFLPEPIHELNILQKNYQALYQQDKISYAVNLT
Ga0268308_102442113300028151PhyllosphereKKNKFSKLSNMINSTESYTRDMVLKVLPEPSPELNIFQKNYQALYLQDKLVMHLT
Ga0268320_101694313300028153PhyllosphereSKPLTKINSTESYTRDIILKFLPNPSNELNILQKNYQALYQHNELVMQLT
Ga0268341_101303113300028154PhyllosphereMNKFSQLLNKINSTKSYTRDMVLKFLPEPSHEPNILQKKNYQALHQPDKLVMHLT
Ga0268341_102673413300028154PhyllosphereKMNKISKLLNKIKFTESYTRDMVLKFLPEPIHELSTFHKYYQALYQHDKLVMQLT
Ga0268304_100583313300028256PhyllosphereRSDKINKISKLLTKIKSTESYTMDMVLKFLPESSHELNILQKNYQALYPPDKLVMHLT
Ga0268333_100910713300028467PhyllosphereMNKFSKILNKINSTVSYTRDMVLKFLPESSHELNIFQKNYQALYHQDNLVMQLTYHELA
Ga0268337_101334313300028469PhyllosphereLLTKINSTESYTRDMVLKFLPEPINELNILQKNYQALYTPDKLVMLLT
Ga0268307_102014613300028470PhyllosphereVTKRIKTADHLTKINSPESCTRDMILKFLPEPTHELNILQKNYHALYPPDILAMQLT
Ga0268307_102120913300028470PhyllosphereISKLLTKINSIESYTRDMVLKFLPEPRHELNILQKNYQALYPPDKLVMHLT
Ga0268315_102448113300028472PhyllosphereMNKFSKILNKINSTVSYTRDMVLKFLPESSHELNIFQKNYQALYHQDKLVMQLTYHELA
Ga0268319_101547313300028473PhyllosphereFSKPLTKINSTESYTRDMVLKFLPEPSHKLNIFHKNYQALYHQDKLVIQLTYHELA
Ga0268331_101075013300028474PhyllosphereLDFNHIYSRDDQKNKISKPLTKINSPEPSKESCTMDMVLKFLPEPSKEINILQKNYQALYSPDKLVMLLT
Ga0268327_102652813300028475PhyllosphereRDDKKNKISKPLTKINSPEPSKESCTMDMVLKFLPEPSKELNILQKNYQALYSPDKLVMLLT
Ga0268329_102123113300028476PhyllosphereKTSKPLTKINSPESCTRDMILKFLPEPNPELDILHKNYQALYSPDKLVMLLT
Ga0268309_100501513300028477PhyllosphereINKPLNKINSPESCTMDMVLKFLPEPNHEPNILHKNYEALYSPDKLVMLLT
Ga0214497_102632433300032689Switchgrass PhyllosphereMNKFSKPLTKLNSTESYTRDIVLKFLPDPINKLNIFHKNYQTLYHHDKLVMQLTYNELA
Ga0314746_115239713300032758Switchgrass PhyllosphereGGDKKNKISKLLSKINFIGSYTRNIVLKFLSDPSDEINILQKNYQALYHYDKLVLQLI
Ga0314726_12593913300032918Switchgrass PhyllosphereXTKKNKILNKIKSTESYTRDMVLKFLPEPSHELKILQKNYQALSQQDKLVMHLTYHELA


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