Metagenome / Metatranscriptome Family F071620

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071620
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	58 residues
Representative Sequence	VQDLLLLAVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL
Number of Associated Samples	57
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.43 %
% of genes near scaffold ends (potentially truncated)	19.67 %
% of genes from short scaffolds (< 2000 bps)	80.33 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.967 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (42.623 % of family members)
Environment Ontology (ENVO)	Unclassified (43.443 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.475 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 61.45% β-sheet: 0.00% Coil/Unstructured: 38.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF12680	SnoaL_2	17.21
PF01134	GIDA	15.57
PF00497	SBP_bac_3	9.84
PF07883	Cupin_2	4.92
PF10049	DUF2283	3.28
PF02775	TPP_enzyme_C	2.46
PF12950	TaqI_C	1.64
PF01381	HTH_3	1.64
PF13193	AMP-binding_C	1.64
PF13649	Methyltransf_25	1.64
PF00248	Aldo_ket_red	0.82
PF13586	DDE_Tnp_1_2	0.82
PF08240	ADH_N	0.82
PF13641	Glyco_tranf_2_3	0.82
PF13401	AAA_22	0.82
PF11765	Hyphal_reg_CWP	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.97 %
Unclassified	root	N/A	18.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.97 %
Unclassified	root	N/A	18.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.97 %
Unclassified	root	N/A	18.03 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.64 %
Unclassified	root	N/A	18.03 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.00 %
Unclassified	root	N/A	18.03 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	38.52 %
Unclassified	root	N/A	18.03 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.10 %
Candidatus Saccharibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.64 %

Name	Rank	Taxonomy	Distribution
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	38.52 %
Unclassified	root	N/A	18.03 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	4.10 %
unclassified Saccharibacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.82 %

Name	Rank	Taxonomy	Distribution
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	38.52 %
Unclassified	root	N/A	18.03 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	4.10 %
Candidatus Saccharibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	30.33 %
Unclassified	root	N/A	18.03 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	4.10 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	3.28 %
Candidatus Saccharibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	1.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	30.33 %
Unclassified	root	N/A	18.03 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	4.10 %
Candidatus Saccharibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1.64 %
Rubrobacter tropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1.64 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	0.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104291984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1042	Open in IMG/M
3300002568\|C688J35102_120850700	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300005562\|Ga0058697_10140830	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300005562\|Ga0058697_10179128	Not Available	946	Open in IMG/M
3300005985\|Ga0081539_10504611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	501	Open in IMG/M
3300006169\|Ga0082029_1315804	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300007790\|Ga0105679_10131935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1487	Open in IMG/M
3300007790\|Ga0105679_10228937	Not Available	1062	Open in IMG/M
3300007790\|Ga0105679_10849630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1336	Open in IMG/M
3300009789\|Ga0126307_10000782	All Organisms → cellular organisms → Bacteria	20961	Open in IMG/M
3300009789\|Ga0126307_10088482	All Organisms → cellular organisms → Bacteria	2447	Open in IMG/M
3300009789\|Ga0126307_10419036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1080	Open in IMG/M
3300009789\|Ga0126307_10533321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	947	Open in IMG/M
3300009789\|Ga0126307_10753578	Not Available	786	Open in IMG/M
3300009840\|Ga0126313_10003602	All Organisms → cellular organisms → Bacteria	8957	Open in IMG/M
3300009840\|Ga0126313_10041788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3197	Open in IMG/M
3300009840\|Ga0126313_10092575	Not Available	2210	Open in IMG/M
3300009840\|Ga0126313_10122354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1938	Open in IMG/M
3300009840\|Ga0126313_10538737	Not Available	937	Open in IMG/M
3300009840\|Ga0126313_10544330	Not Available	932	Open in IMG/M
3300010036\|Ga0126305_10001825	All Organisms → cellular organisms → Bacteria	9603	Open in IMG/M
3300010036\|Ga0126305_10115483	All Organisms → cellular organisms → Bacteria	1632	Open in IMG/M
3300010036\|Ga0126305_10187304	All Organisms → cellular organisms → Bacteria → Proteobacteria	1306	Open in IMG/M
3300010036\|Ga0126305_10211761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1232	Open in IMG/M
3300010036\|Ga0126305_10888738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	608	Open in IMG/M
3300010037\|Ga0126304_10001098	All Organisms → cellular organisms → Bacteria	12308	Open in IMG/M
3300010037\|Ga0126304_10049947	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300010037\|Ga0126304_10173917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1401	Open in IMG/M
3300010037\|Ga0126304_10573795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	760	Open in IMG/M
3300010038\|Ga0126315_11205792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	514	Open in IMG/M
3300010039\|Ga0126309_10010363	All Organisms → cellular organisms → Bacteria	3805	Open in IMG/M
3300010039\|Ga0126309_10015783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	3211	Open in IMG/M
3300010039\|Ga0126309_10015804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3209	Open in IMG/M
3300010039\|Ga0126309_10037068	All Organisms → cellular organisms → Bacteria	2261	Open in IMG/M
3300010039\|Ga0126309_10037413	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300010039\|Ga0126309_10107077	Not Available	1448	Open in IMG/M
3300010039\|Ga0126309_10121729	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300010039\|Ga0126309_10137431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300010039\|Ga0126309_10148619	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1257	Open in IMG/M
3300010039\|Ga0126309_10349037	Not Available	870	Open in IMG/M
3300010040\|Ga0126308_10209110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1256	Open in IMG/M
3300010041\|Ga0126312_10172061	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300010041\|Ga0126312_10330935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1077	Open in IMG/M
3300010042\|Ga0126314_10088430	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300010042\|Ga0126314_10100266	All Organisms → cellular organisms → Bacteria	1966	Open in IMG/M
3300010042\|Ga0126314_10122189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1792	Open in IMG/M
3300010042\|Ga0126314_10799039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	694	Open in IMG/M
3300010042\|Ga0126314_10821858	Not Available	685	Open in IMG/M
3300010044\|Ga0126310_10053128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2261	Open in IMG/M
3300010044\|Ga0126310_10085369	All Organisms → cellular organisms → Bacteria	1872	Open in IMG/M
3300010044\|Ga0126310_10093606	All Organisms → cellular organisms → Bacteria	1803	Open in IMG/M
3300010044\|Ga0126310_10364113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1018	Open in IMG/M
3300010044\|Ga0126310_10380733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	999	Open in IMG/M
3300010044\|Ga0126310_11572192	Not Available	542	Open in IMG/M
3300010045\|Ga0126311_10016343	All Organisms → cellular organisms → Bacteria	4296	Open in IMG/M
3300010045\|Ga0126311_10321208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1172	Open in IMG/M
3300010045\|Ga0126311_10339980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1141	Open in IMG/M
3300010045\|Ga0126311_11531005	Not Available	559	Open in IMG/M
3300010166\|Ga0126306_10016541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	4798	Open in IMG/M
3300010166\|Ga0126306_10041443	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300010166\|Ga0126306_11201643	Not Available	623	Open in IMG/M
3300010395\|Ga0058701_10661240	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300012045\|Ga0136623_10114730	Not Available	1173	Open in IMG/M
3300012045\|Ga0136623_10228142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	796	Open in IMG/M
3300012093\|Ga0136632_10106521	Not Available	1296	Open in IMG/M
3300012093\|Ga0136632_10353561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	659	Open in IMG/M
3300012184\|Ga0136610_1125862	Not Available	896	Open in IMG/M
3300012186\|Ga0136620_10096061	Not Available	1367	Open in IMG/M
3300012681\|Ga0136613_10664300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	558	Open in IMG/M
3300012684\|Ga0136614_10119810	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300013024\|Ga0170682_1014675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1868	Open in IMG/M
3300014487\|Ga0182000_10096233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	985	Open in IMG/M
3300017787\|Ga0183260_10609958	Not Available	699	Open in IMG/M
3300017789\|Ga0136617_10577223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	885	Open in IMG/M
3300017789\|Ga0136617_11200389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	570	Open in IMG/M
3300017965\|Ga0190266_10096470	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1202	Open in IMG/M
3300018432\|Ga0190275_10012183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	6410	Open in IMG/M
3300018432\|Ga0190275_10014293	All Organisms → cellular organisms → Bacteria	5982	Open in IMG/M
3300018432\|Ga0190275_10029616	All Organisms → cellular organisms → Bacteria → Proteobacteria	4373	Open in IMG/M
3300018432\|Ga0190275_11256984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	816	Open in IMG/M
3300018432\|Ga0190275_11599678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	729	Open in IMG/M
3300018432\|Ga0190275_13631221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	500	Open in IMG/M
3300018465\|Ga0190269_10303618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	932	Open in IMG/M
3300018466\|Ga0190268_10007233	All Organisms → cellular organisms → Bacteria	2860	Open in IMG/M
3300018466\|Ga0190268_10012852	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300018466\|Ga0190268_10358425	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300018469\|Ga0190270_11026419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	853	Open in IMG/M
3300018469\|Ga0190270_11964392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	643	Open in IMG/M
3300018476\|Ga0190274_13689712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	518	Open in IMG/M
3300018481\|Ga0190271_10038670	All Organisms → cellular organisms → Bacteria	3943	Open in IMG/M
3300018481\|Ga0190271_11322184	Not Available	841	Open in IMG/M
3300018920\|Ga0190273_10939021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	705	Open in IMG/M
3300018920\|Ga0190273_11757250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	562	Open in IMG/M
3300019377\|Ga0190264_10860288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	701	Open in IMG/M
3300019377\|Ga0190264_12069406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	525	Open in IMG/M
3300019767\|Ga0190267_10378401	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300019767\|Ga0190267_10666189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	661	Open in IMG/M
3300019767\|Ga0190267_10725467	Not Available	645	Open in IMG/M
3300019767\|Ga0190267_10959816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	594	Open in IMG/M
3300019767\|Ga0190267_11212969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	554	Open in IMG/M
3300027638\|Ga0208612_1046044	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300027809\|Ga0209574_10090949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	852	Open in IMG/M
3300028705\|Ga0307276_10087196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	741	Open in IMG/M
3300028705\|Ga0307276_10201342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	524	Open in IMG/M
3300028705\|Ga0307276_10219057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	505	Open in IMG/M
3300028744\|Ga0307318_10141142	Not Available	825	Open in IMG/M
3300028744\|Ga0307318_10337207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	530	Open in IMG/M
3300028754\|Ga0307297_10045838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1334	Open in IMG/M
3300028771\|Ga0307320_10279582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	661	Open in IMG/M
3300028778\|Ga0307288_10106020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1028	Open in IMG/M
3300031091\|Ga0308201_10176768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	689	Open in IMG/M
3300031824\|Ga0307413_12165146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	504	Open in IMG/M
3300032080\|Ga0326721_10362062	Not Available	829	Open in IMG/M
3300032159\|Ga0268251_10153541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	870	Open in IMG/M
3300032159\|Ga0268251_10193125	Not Available	794	Open in IMG/M
3300033989\|Ga0334924_031405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	675	Open in IMG/M
3300034005\|Ga0334930_012710	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1264	Open in IMG/M
3300034132\|Ga0334915_061169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	765	Open in IMG/M
3300034173\|Ga0334925_119338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	570	Open in IMG/M
3300034221\|Ga0334937_020748	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300034391\|Ga0334917_019086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1109	Open in IMG/M
3300034781\|Ga0334935_131096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.44%
Host-Associated	Host-Associated	6.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.61%
Aquatic	Environmental → Aquatic	9.84%
Plants	Host-Associated → Plants	6.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.79%
Freshwater	Environmental → Aquatic → Freshwater	9.84%
Phylloplane	Host-Associated → Plants → Phylloplane	4.92%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.59%
Ice	Environmental → Aquatic → Freshwater → Ice	9.84%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	4.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.92%
Sand	Environmental → Terrestrial → Soil → Sand	2.46%
Loam	Environmental → Terrestrial → Soil → Loam	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	72.95%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	9.84%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	4.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.92%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.82%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	42.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	28.69%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	9.02%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.92%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	3.28%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.46%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	1.64%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.82%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012184	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300013024	Gypsum crust hypoendolithic microbial communities from the Atacama Desert, Chile - KM37, HE	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033989	Biocrust microbial communities from Mojave Desert, California, United States - 20HNC	Environmental	Open in IMG/M
3300034005	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M
3300034781	Biocrust microbial communities from Mojave Desert, California, United States - 31SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1042919842	3300000956	Soil	VVAVLAAVGCAYFSVAAVLDGHRSLSRSAALAFFVFSLIVAVYFRGVL*
C688J35102_1208507002	3300002568	Soil	VQDFILLVVAVLAAVGCAFFYIAAVLDGHRSLSRSAAVAFFVFSLIVAVYFRRIL*
Ga0058697_101408301	3300005562	Agave	VQDFILLVVAVLAAVGCAYFYVAAVLDGHRSLSRAAALAFFVFSLIVAVYFRRIL*
Ga0058697_101791283	3300005562	Agave	VRAGTQDYLGLAVAVVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL*
Ga0081539_105046112	3300005985	Tabebuia Heterophylla Rhizosphere	VRDLLLLMVAIIAAVGCAYYYVVAVLDGHRALSRAAALAFFVFSLIVAVYIRKVLL*
Ga0082029_13158042	3300006169	Termite Nest	VRDLLLLVVAIIAAVGCAYYYVVAVLDGHRALSRSAILAFFVFSLIVAVYIKRILL*
Ga0105679_101319353	3300007790	Soil	VQDFLLLAIAILAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL*
Ga0105679_102289372	3300007790	Soil	VRAGTQDLLGLAVAIVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAVVFLFRIL*
Ga0105679_108496302	3300007790	Soil	VRAGTQDLLGLAVAIVAAAGCAYYYIVAVLDNHRSLSRSAALAFFAFNVVAAVFLFRIL*
Ga0126307_1000078216	3300009789	Serpentine Soil	VQDLLLTVAIIAAVGCAYYYIVAVLDGHRALSRSAVLAFFVFSLIVAVYIRRILF*
Ga0126307_100884821	3300009789	Serpentine Soil	RGPGLHRRVGLGVRVRDLLFLIVAIIAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAVYIRRILW*
Ga0126307_104190362	3300009789	Serpentine Soil	VSVRTQDLLVLAVAAVAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSVVATVFFMRSL*
Ga0126307_105333212	3300009789	Serpentine Soil	VHDLLLLMVAIIAAVGCAYYYVVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF*
Ga0126307_107535783	3300009789	Serpentine Soil	VGARAQDFLLLAVAILAAVGCTYYFIVAVLEGHRALSRSALLAFFVFSLLVAMYFRKVL*
Ga0126313_100036024	3300009840	Serpentine Soil	MVAIIAAVGCAYYYIVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF*
Ga0126313_100417884	3300009840	Serpentine Soil	VGARAQDFLLPAVAILAAVGCTYYFIVAVLEGHRALSRSALLAFFVFSLLVAVYFRKVL*
Ga0126313_100925752	3300009840	Serpentine Soil	LKDSEGGGVSVRTQDFLGLAVAIVTAAGCAYFYIVAVLDEHRTLSRSAALAFLLFSVVAAVFFRRIL*
Ga0126313_101223544	3300009840	Serpentine Soil	VRDLLFLMIAIIAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAVYIRRILW*
Ga0126313_105387371	3300009840	Serpentine Soil	RIQDLILMSIAIFAAVGCACYCVLAVLDGHRSLSRSAALAFFVFSLIVTVYFRRIL*
Ga0126313_105443303	3300009840	Serpentine Soil	VRDLLLLLVAIVAAVGCAYYYVVAVLDGHRALSRSAVLAFFVFSLIVAVYIRRVLW*
Ga0126305_100018256	3300010036	Serpentine Soil	VRDLLFLIVAIIAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAVYIRRILW*
Ga0126305_101154831	3300010036	Serpentine Soil	VHDLLLLMVAIIAAVGCAYYYVVAVLDRHRALSRPAALAFFVFSLIVAVYIRR
Ga0126305_101873041	3300010036	Serpentine Soil	VQDLLLTVAIIAAVGCAYYYIVAVLDGHRALSRSAVLAFFVFSLIVAVYIRRIL
Ga0126305_102117613	3300010036	Serpentine Soil	VSVRTQDLLVLAVAAVAAVGCTYYYIVAVLAGHRALSRSAALAFFGFSVVAAVFFMRSL*
Ga0126305_108887382	3300010036	Serpentine Soil	VSDRTQDLLALAIAIVAAAGCAYYYVVAVLDGQRALSRSAALAFFVFSVVAAVFFLRVL*
Ga0126304_100010989	3300010037	Serpentine Soil	VSVRTQDLLVLAVAAVAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSVVAAVFFMRSL*
Ga0126304_100499473	3300010037	Serpentine Soil	VQDLLLLTVAIIAAVGCAYYYIVAVLDGHRALSRSAVLAFFVFSLIVAVYIRRILF*
Ga0126304_101739171	3300010037	Serpentine Soil	VRDLLLLMVAIIAAVGCAYYYVVAVLDRHRALSRPAALAFFVFSLIVAVYI
Ga0126304_105737951	3300010037	Serpentine Soil	VRDLLFLMVAIIAAVGCAYYYIVAVLDGHRTLSRSAVVAFFVFSLIVAVYIRRILW*
Ga0126315_112057922	3300010038	Serpentine Soil	STAHDLLLLMVAIIAAVGCAYYYIVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF*
Ga0126309_100103634	3300010039	Serpentine Soil	VGARTQDLIVLAVAIFAAGGCAYYYIVAVLDHHRALSRSAALAFFIFSLIVAVFFRRIL*
Ga0126309_100157832	3300010039	Serpentine Soil	VGVRTQDFILLAFAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRIL*
Ga0126309_100158043	3300010039	Serpentine Soil	VGARTQDLIVLAVAIFAAVGCAYYYIVAVLDQHRALSRSAALAFFIFSPIVAVFFRRIL*
Ga0126309_100370683	3300010039	Serpentine Soil	VGARAQDFPLLAVAILAAVGCTYYFIVAVLDGHRALSRSALLAFFVFSLLVAVYFRKVL*
Ga0126309_100374133	3300010039	Serpentine Soil	MARSAGDFTDSGGGVGVRTQDFLVLAVALVTAVGFAYYYVVAVLDEHRALSRSAALAFFLFSLVAAVFFFRILRA*
Ga0126309_101070772	3300010039	Serpentine Soil	VRAGTQDLLGLAIAIVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL*
Ga0126309_101217291	3300010039	Serpentine Soil	VQDLVLLAVAILAALGCAYYYVVAVLDGHRALSRSAALAFFIFSLIVAVYVRRVL*
Ga0126309_101374313	3300010039	Serpentine Soil	VQDFLLLAVAILAAVGCAYYYVAAVLDGHRALSRSAALAFFVFSLIVAVYFRRLL*
Ga0126309_101486193	3300010039	Serpentine Soil	VRAGTQDYLGLAVAIAAAVGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL*
Ga0126309_103490372	3300010039	Serpentine Soil	VRVGTQDYLGLAVAIAAAVGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL*
Ga0126308_102091101	3300010040	Serpentine Soil	GARVRDLLLLMVAIIAAVGCAYYYVVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF*
Ga0126312_101720612	3300010041	Serpentine Soil	VGARAQDFLLRAVAILAAVGCTCYFIVVVLEGHRALSRSAVLAFFVFSLLVAVYFRKVL*
Ga0126312_103309352	3300010041	Serpentine Soil	VSVRTQEFLVMAVAIVAAAGCAYYYVVAVLDQHRALSRSAALAFFVFNVVAAVFLLRIW*
Ga0126314_100884304	3300010042	Serpentine Soil	VQDLLLTVAIIAAVGCAYYYIVAVLDGHRALSRSAVLAFFVFSLIVAVYI
Ga0126314_101002664	3300010042	Serpentine Soil	VGARIQDLILMSIAIFAAVGCACYCVLAVLDGHRSLSRSAALAFFVFSLIVAMYFRRIL*
Ga0126314_101221891	3300010042	Serpentine Soil	QDFLLRAVAILAAVGCTCYFIVVVLEGHRALSRSAVLAFFVFSLLVAVYFRKVL*
Ga0126314_107990393	3300010042	Serpentine Soil	VRDLLFLMIAIIAAVGCAYYYIVAELDGHRALSRSAVVAFFVFSLIVAVYIRRILW*
Ga0126314_108218583	3300010042	Serpentine Soil	VRAGTQDYLGLAVAVVAAAGCAYYYIVAVLDNHRALSRSAALALFAFNVVAAVFLFRIL*
Ga0126310_100531285	3300010044	Serpentine Soil	VRAGTQDLLGLAVAIVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL*
Ga0126310_100853694	3300010044	Serpentine Soil	VRDLLFLMIAIIAAVGCAYYYIVAVLDGHRTLSRSAVVAFFVFSLIVAVYIRRILW*
Ga0126310_100936064	3300010044	Serpentine Soil	VGARVQDFLLRAVAILAAVGCTCYFIVVVLEGHRALSRSAVLAFFVFSLLVAVYFRKVL*
Ga0126310_103641132	3300010044	Serpentine Soil	VGARVQDLIVLAVALFAAVGCAYYYVVAVLDQHRALSRSAALAFFVFSLIFAVFFRRIL*
Ga0126310_103807331	3300010044	Serpentine Soil	GARAQDFPLLAVAILAAVGCTYYFIVAVLDGHRALSRSALLAFFVFSLLVAVYFRKVL*
Ga0126310_115721922	3300010044	Serpentine Soil	AGGGDVGARTQDFIVFAVAIVAAAGCAFYHIVAVVDVHRAPPRSAALAFFFSLGAAVFFSRIL*
Ga0126311_100163438	3300010045	Serpentine Soil	VRDLLFLMVAIIAAVGCAYYYIVAELDGHRALSRSAVVAFFVFSLIVAVYIRRILW*
Ga0126311_103212082	3300010045	Serpentine Soil	VGARAQDFLLLAVAILAAVGCTYYFIVAVLDGHRALSRSALLAFFVFSLLVAVYFRKVL*
Ga0126311_103399803	3300010045	Serpentine Soil	VQDLLLLMVAIIAAVGCAYYYVVAVLDKHRALSRSAALAFFIFSLIVAVYIRRML*
Ga0126311_115310052	3300010045	Serpentine Soil	LAVAIFVAVGCAYYYVLVVLDGHRSLSRSAALAFFVFSLIVAMYFRRIL*
Ga0126306_100165415	3300010166	Serpentine Soil	VSVRTQDLLVLAVAAVAAVGCTYYYIVAVLDGHRALSRSAALAFFVFSVVAAVFFMRSL*
Ga0126306_100414434	3300010166	Serpentine Soil	VRDLLLLMVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFSVFSLIVAVYIRRIL*
Ga0126306_112016433	3300010166	Serpentine Soil	VGARAQDFLLRAVAILAAVGCTYYFIVAVLEGHRALSRSALLAFFVFSLLVAMYFRKVL*
Ga0058701_106612401	3300010395	Agave	VQDFLLLAVAILAAMGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL*
Ga0136623_101147301	3300012045	Polar Desert Sand	VGIRTQDFILLAVAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFS
Ga0136623_102281421	3300012045	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAALAFFLFSVVAAVFFRRIL*
Ga0136632_101065212	3300012093	Polar Desert Sand	VGIRTQDFILLAVAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRIL*
Ga0136632_103535612	3300012093	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRIL*
Ga0136610_11258622	3300012184	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAAHAFFLFSVVAAVFFRRIL*
Ga0136620_100960613	3300012186	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYYYIVAMLDEHRALSRSAALAFFLFSVVAAVFFRRIL*
Ga0136613_106643001	3300012681	Polar Desert Sand	RRAEMLKGGGVGVRTQDFILLAVAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRIL*
Ga0136614_101198105	3300012684	Polar Desert Sand	LTDSEGGGVGVRTQDFILLALAIVTAVGCAYYYIVAVLDEHRALSRSAALAFFLFSVVAAVFFRRIL*
Ga0170682_10146752	3300013024	Rock	VSDRTLDLLMLLVALLAAVGCAYYYVVAVLDEDRPLSRASALAFVVFGAVAAVIFFWGVL
Ga0182000_100962332	3300014487	Soil	VGPRVQDLIVLAVALFAAVGCAYFYVVAVLDQHRALSRSAALAFFVFSLIFAVFFRRVL*
Ga0183260_106099581	3300017787	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAALAFFLFSVVAAVFFRR
Ga0136617_105772232	3300017789	Polar Desert Sand	LTDSEGGGVGVRTQDFILLALAIVTAVGCAYYYIVAVLDEHRALSRSAALAFFLFSVVAAVFFRRIL
Ga0136617_112003892	3300017789	Polar Desert Sand	VGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAALAFFLFSVVAAVFFRRIL
Ga0190266_100964701	3300017965	Soil	GIRVQDLLLLVVAIIAAVGCAYYYIVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF
Ga0190275_100121833	3300018432	Soil	VRDLLLLLVAIVAAVGCAYYYVVAVLDGHRTLSRSAVLAFFVFSLIVAVYIRRVLW
Ga0190275_100142933	3300018432	Soil	MRDLLLLLVAIVAAVGCAYYYVAAVLDGHRALSRSAVLAFFIFSLIVAIYIRRVLW
Ga0190275_100296166	3300018432	Soil	VQDLLLLAVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL
Ga0190275_112569841	3300018432	Soil	KAKPERAEVLKGGGVGVRTQDFILLAVAIVTALGCAYYYVVAVLDEHRALSRSAALAFFLFSVMAAVFFKRIL
Ga0190275_115996782	3300018432	Soil	VQDLLLLAVAIIAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAVYIRRI
Ga0190275_136312211	3300018432	Soil	VGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAALAFFLFSVMAAVFFKRIL
Ga0190269_103036182	3300018465	Soil	VHDLLLLAVAITAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAVYIRRFL
Ga0190268_100072335	3300018466	Soil	VRAGTQDLLGLAVAIVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL
Ga0190268_100128523	3300018466	Soil	MVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYIRRFL
Ga0190268_103584253	3300018466	Soil	VGARAQDFILLVVAILAAAGCAYYYVAAVLDGHRALSRSAAVAFFVFSLLVAVYFRKVL
Ga0190270_110264192	3300018469	Soil	LNLPDLLVLLVAIVAAAGCAYYYIVAVLDGHRALARSAALAFFIFSLVVAVFFRKLM
Ga0190270_119643923	3300018469	Soil	VRDLLLLMVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL
Ga0190274_136897122	3300018476	Soil	VQDLLLLAVAIIAAAGCAYYYVVAVLDGHRTLSRSAVLAFFVFSLIVAVYIRRVLW
Ga0190271_100386703	3300018481	Soil	LNLPDLLVLIVAIVAAAGCAYYYIVAVLDGHRALARSAALAFFIFSLVVAVFFRKLM
Ga0190271_113221841	3300018481	Soil	VGTRVQDLLLLAVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLIVAVYVRRIL
Ga0190273_109390212	3300018920	Soil	LDARAQDLLLLAVAILAAVGCAYYYIVAVLDGHRALSRSAPLAFFVFSILVAVYFRRLL
Ga0190273_117572502	3300018920	Soil	PKGGGEVGVRTQDFILLAVAIVTALGCAYYYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRVL
Ga0190264_108602882	3300019377	Soil	VDVKTLDFLVLMVAIVAAVGCAYYYVVAVLDQHRTLSRSAALAFFLFSLMVAVMVLRIL
Ga0190264_120694063	3300019377	Soil	GSRTLDFLVLLVAIVAAVGCAYYYIVAVLDGHRALSRSAALAFFIFSLVVAVLFRKLL
Ga0190267_103784012	3300019767	Soil	VGSTAHDLLLLMVAIIAAVGCAYYYIVAVLDRHRALSRPAALAFFVFSLIVAVYIRRLLF
Ga0190267_106661892	3300019767	Soil	VKDYILLAVAILAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLLVAVYFRRIL
Ga0190267_107254672	3300019767	Soil	VRAGTQDLLGLAVAIVAAAGCAYYYIVAVLDNHRSLSRSAALAFFAFNVVAAV
Ga0190267_109598162	3300019767	Soil	VGARVQDLIVLAVALFAAVGCAYYYVVAVLDQHRALSRSAALAFFVFSLIFAVFFRRIL
Ga0190267_112129692	3300019767	Soil	LGAKVQDFILLAVAILAAVGCAYYYIVAVLDGHRALSRSAAVAFFVFSLLVAVYFRKVL
Ga0208612_10460444	3300027638	Polar Desert	VGIRTQDFILLAVAIVTALGCAYFYIVAVLDEHRALSRSAALAFFLFSVMAAVFFRRIL
Ga0209574_100909492	3300027809	Agave	VRDLLLLLVAIIAAVGCAYYYVAAVLDGHRALSRSAVLAFFVFSLIVAVYIRRVLW
Ga0307276_100871963	3300028705	Soil	VRDLLLLMVAIIAAVGCAYYYVVAVLDGHRALSRSAAVAFFVFSLIVAVYIRKTLL
Ga0307276_102013422	3300028705	Soil	VSARVQDLIVLAVALFAAVGCAYYYVVAVLDQHRALSRSAALAFFVFSLIFAVFFRRIL
Ga0307276_102190571	3300028705	Soil	VGARIQNLILLAVAIFAAVGCAYYYVLAVLDGHRSLSRSAALAFFVFSLIVAM
Ga0307318_101411423	3300028744	Soil	VGARIQNLILLAVAIFAAVGCAYYYVLAVLDGHRSLSRSAALAFFVFSLIVAMYFRRIL
Ga0307318_103372072	3300028744	Soil	VRVGTQDFLGLTVAVVAAAGCAYYYIVAVLDNHRALSRSAALAFFAFNVVAAVFLFRIL
Ga0307297_100458382	3300028754	Soil	VGARAQDFLLLAVANLGAVGCTYYFIVAVLDGHRALARSAVRAFFVFSLLVAVYFRKVL
Ga0307320_102795822	3300028771	Soil	VQDYILLVVAILAAVGCAYYYVVAVLDGHRALSRSAAIAFFVFSLLVAVYFRMIL
Ga0307288_101060203	3300028778	Soil	VQDYILLVVAILAAVGCAYYYVVAVLDGHRALSRSAAVAFFVFSLLVAVYFRRIL
Ga0308201_101767682	3300031091	Soil	VQDLLLLVVAIIAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLIVAIYIRKLLL
Ga0307413_121651462	3300031824	Rhizosphere	VRDLLLLMVAIIAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLVVAVYIRILL
Ga0326721_103620622	3300032080	Soil	VQDYILLVVAILAAVGCAYYYVVAVLDGHRALSRSAALAFFVFSLLVAVYFRRIL
Ga0268251_101535411	3300032159	Agave	AGVQDYILLAVAVLAAVGCAYYYVVAVLDGQRGLSRSAALAFFVFSLLVAVYFRRIL
Ga0268251_101931252	3300032159	Agave	LGARTLDFTVLVVAIVAAAGCAYYHIVAVLEEHRAPSGSAALAFFFSLVVAVFFSRIL
Ga0334924_031405_46_213	3300033989	Hypolithic Biocrust	VRDLLLLLVAIVAAVGCAYYYVVAVLDQHRALSRSAALAFFVFSLIFAVFFRRIL
Ga0334930_012710_188_367	3300034005	Sub-Biocrust Soil	VSARTQDLIVLAVAIFAAAGCAYYYIVAVLDQHRALSRSAALAFFIFSLIVAVFFRRIL
Ga0334915_061169_165_335	3300034132	Hypolithic Biocrust	VRDLLLLLVAIIAAVGCAYYYVVAVLDGHRALSRSAVLAFFVFSLIVAVYIRRVLW
Ga0334925_119338_1_156	3300034173	Hypolithic Biocrust	VGAKAQNFLLLAVATLAAVGCAYYYIVAVLDGHRALSRSAALAFFVFSLILA
Ga0334937_020748_1072_1251	3300034221	Biocrust	VSARTQDLIVLAVAIFAAAGCAYYYIVAVLDQHRALSRSAALAFFIFSLVVAVFFRRIL
Ga0334917_019086_709_879	3300034391	Hypolithic Biocrust	VRDLLLLLVAIVAAVGCAYYYVVAVLDGQRALSRSAVLAFFVFSLIVAIYIRRVLW
Ga0334935_131096_202_381	3300034781	Biocrust	VGARTQDLIVLAVAIFAAAGCAYYYIVAVLDQHRALSRSAALAFFIFSLVVAVFFRRIL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071620

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences