Metagenome / Metatranscriptome Family F049078

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049078
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	74 residues
Representative Sequence	MKVHVKHALKTDVASAFKLCTEQKSQEQVYAQLGGTDVKIKREGRAPNVKLKISRKEVANPPAAIKRLVPA
Number of Associated Samples	97
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.32 %
% of genes from short scaffolds (< 2000 bps)	93.88 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.592 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (31.293 % of family members)
Environment Ontology (ENVO)	Unclassified (40.136 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.537 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.18% β-sheet: 15.15% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF00106	adh_short	44.90
PF06055	ExoD	12.93
PF02775	TPP_enzyme_C	7.48
PF01370	Epimerase	2.72
PF10698	DUF2505	2.04
PF01758	SBF	0.68
PF02776	TPP_enzyme_N	0.68
PF01063	Aminotran_4	0.68
PF08541	ACP_syn_III_C	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	12.93
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.36

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.59 %
Unclassified	root	N/A	20.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.59 %
Unclassified	root	N/A	20.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.59 %
Unclassified	root	N/A	20.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.22 %
Unclassified	root	N/A	20.41 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.36 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	23.13 %
Unclassified	root	N/A	20.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	8.84 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	23.13 %
Unclassified	root	N/A	20.41 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8.84 %
candidate division KSB1	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	23.13 %
Unclassified	root	N/A	20.41 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	5.44 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.40 %
unclassified candidate division KSB1	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	23.13 %
Unclassified	root	N/A	20.41 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	5.44 %
Curvibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter	3.40 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	23.13 %
Unclassified	root	N/A	20.41 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	5.44 %
Curvibacter delicatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	3.40 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_109426099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1117	Open in IMG/M
3300000956\|JGI10216J12902_114893975	Not Available	549	Open in IMG/M
3300001213\|JGIcombinedJ13530_105113624	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300001213\|JGIcombinedJ13530_109278504	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300003860\|Ga0031658_1026465	Not Available	978	Open in IMG/M
3300003860\|Ga0031658_1031992	Not Available	892	Open in IMG/M
3300003910\|JGI26437J51864_10123748	Not Available	586	Open in IMG/M
3300004048\|Ga0055494_10030729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	944	Open in IMG/M
3300004155\|Ga0066600_10201808	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300004156\|Ga0062589_101657992	Not Available	636	Open in IMG/M
3300004266\|Ga0055457_10070768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	893	Open in IMG/M
3300004282\|Ga0066599_100218602	Not Available	1054	Open in IMG/M
3300004480\|Ga0062592_100795784	Not Available	837	Open in IMG/M
3300004643\|Ga0062591_101430051	Not Available	687	Open in IMG/M
3300004780\|Ga0062378_10147679	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300004808\|Ga0062381_10349496	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005459\|Ga0068867_101341492	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005659\|Ga0073900_10324641	Not Available	693	Open in IMG/M
3300005832\|Ga0074469_10919853	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300006224\|Ga0079037_100132440	All Organisms → cellular organisms → Bacteria → Proteobacteria	2155	Open in IMG/M
3300006224\|Ga0079037_100519737	Not Available	1145	Open in IMG/M
3300006224\|Ga0079037_101105801	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300006224\|Ga0079037_101457206	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300006224\|Ga0079037_101777757	Not Available	616	Open in IMG/M
3300006358\|Ga0068871_101694595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	599	Open in IMG/M
3300006847\|Ga0075431_101598743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	610	Open in IMG/M
3300006969\|Ga0075419_10386751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	957	Open in IMG/M
3300009081\|Ga0105098_10524174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	607	Open in IMG/M
3300009085\|Ga0105103_10241535	Not Available	974	Open in IMG/M
3300009085\|Ga0105103_10717436	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009091\|Ga0102851_11583559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	733	Open in IMG/M
3300009091\|Ga0102851_12515663	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300009111\|Ga0115026_10870538	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300009111\|Ga0115026_10908196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	697	Open in IMG/M
3300009111\|Ga0115026_11589169	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300009131\|Ga0115027_11227977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	601	Open in IMG/M
3300009131\|Ga0115027_11676761	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300009156\|Ga0111538_12427517	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300009157\|Ga0105092_10146213	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300009167\|Ga0113563_10322840	All Organisms → cellular organisms → Bacteria → Proteobacteria	1612	Open in IMG/M
3300009167\|Ga0113563_11092370	Not Available	923	Open in IMG/M
3300009167\|Ga0113563_11323175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300009167\|Ga0113563_11487803	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300009167\|Ga0113563_11782196	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300009167\|Ga0113563_13050618	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009169\|Ga0105097_10406208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	757	Open in IMG/M
3300009170\|Ga0105096_10146967	Not Available	1185	Open in IMG/M
3300009170\|Ga0105096_10279250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	851	Open in IMG/M
3300009610\|Ga0105340_1458743	Not Available	569	Open in IMG/M
3300009776\|Ga0116154_10342116	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010429\|Ga0116241_10334505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1207	Open in IMG/M
3300011445\|Ga0137427_10116030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1087	Open in IMG/M
3300012916\|Ga0157310_10021357	Not Available	1683	Open in IMG/M
3300014267\|Ga0075313_1086840	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300014310\|Ga0075331_1205351	Not Available	502	Open in IMG/M
3300014312\|Ga0075345_1035885	Not Available	985	Open in IMG/M
3300014884\|Ga0180104_1090417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	862	Open in IMG/M
3300015257\|Ga0180067_1036468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1005	Open in IMG/M
3300018429\|Ga0190272_13152820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	513	Open in IMG/M
3300018481\|Ga0190271_12745734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	591	Open in IMG/M
3300020048\|Ga0207193_1692710	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300021859\|Ga0210334_10012903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	521	Open in IMG/M
3300021961\|Ga0222714_10388841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	740	Open in IMG/M
3300022213\|Ga0224500_10147772	Not Available	878	Open in IMG/M
3300022213\|Ga0224500_10177298	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300022214\|Ga0224505_10111646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300023067\|Ga0247743_1015684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	955	Open in IMG/M
3300024056\|Ga0124853_1088275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	571	Open in IMG/M
3300024895\|Ga0208508_1063695	Not Available	631	Open in IMG/M
3300025899\|Ga0207642_10420853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	803	Open in IMG/M
3300025964\|Ga0210127_1023239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	722	Open in IMG/M
3300026072\|Ga0208292_1026647	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300026347\|Ga0256809_1016438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	584	Open in IMG/M
3300026349\|Ga0256811_1044332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	502	Open in IMG/M
3300026375\|Ga0256803_1020747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	691	Open in IMG/M
3300026782\|Ga0207595_101125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	842	Open in IMG/M
3300027378\|Ga0209981_1025120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	861	Open in IMG/M
3300027683\|Ga0209392_1107747	Not Available	885	Open in IMG/M
3300027683\|Ga0209392_1124694	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300027713\|Ga0209286_1189762	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300027871\|Ga0209397_10357799	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300027877\|Ga0209293_10475863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	653	Open in IMG/M
3300027897\|Ga0209254_10100144	All Organisms → cellular organisms → Bacteria	2434	Open in IMG/M
3300027975\|Ga0209391_10101190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1281	Open in IMG/M
3300031784\|Ga0315899_11431557	Not Available	583	Open in IMG/M
3300031834\|Ga0315290_10059419	All Organisms → cellular organisms → Bacteria → Proteobacteria	3129	Open in IMG/M
3300032053\|Ga0315284_11100125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	884	Open in IMG/M
3300032122\|Ga0310895_10041819	Not Available	1636	Open in IMG/M
3300032133\|Ga0316583_10307816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	548	Open in IMG/M
3300032156\|Ga0315295_11618209	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300032164\|Ga0315283_10325532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1669	Open in IMG/M
3300032164\|Ga0315283_10919493	Not Available	930	Open in IMG/M
3300032164\|Ga0315283_12232949	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300032397\|Ga0315287_11077822	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300032397\|Ga0315287_11723146	Not Available	700	Open in IMG/M
3300032401\|Ga0315275_11326853	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300032516\|Ga0315273_10029512	All Organisms → cellular organisms → Bacteria → Proteobacteria	7292	Open in IMG/M
3300032516\|Ga0315273_10497818	Not Available	1632	Open in IMG/M
3300033406\|Ga0316604_10328219	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300033406\|Ga0316604_10445232	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300033408\|Ga0316605_10952256	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300033408\|Ga0316605_11346270	Not Available	691	Open in IMG/M
3300033408\|Ga0316605_11573544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	638	Open in IMG/M
3300033408\|Ga0316605_11767379	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300033408\|Ga0316605_12017204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	561	Open in IMG/M
3300033408\|Ga0316605_12083481	Not Available	552	Open in IMG/M
3300033408\|Ga0316605_12131982	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300033413\|Ga0316603_10554824	Not Available	1061	Open in IMG/M
3300033413\|Ga0316603_11512701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	636	Open in IMG/M
3300033413\|Ga0316603_11572273	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300033413\|Ga0316603_11665493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	604	Open in IMG/M
3300033414\|Ga0316619_10952104	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300033414\|Ga0316619_11612826	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300033416\|Ga0316622_100322704	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300033418\|Ga0316625_100038038	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300033418\|Ga0316625_100603233	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300033419\|Ga0316601_100027230	All Organisms → cellular organisms → Bacteria	3904	Open in IMG/M
3300033419\|Ga0316601_100129725	All Organisms → cellular organisms → Bacteria → Proteobacteria	2102	Open in IMG/M
3300033419\|Ga0316601_100203977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	1737	Open in IMG/M
3300033419\|Ga0316601_100371877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300033419\|Ga0316601_100560478	Not Available	1105	Open in IMG/M
3300033419\|Ga0316601_101165244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	772	Open in IMG/M
3300033419\|Ga0316601_101724885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	631	Open in IMG/M
3300033434\|Ga0316613_10457614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	863	Open in IMG/M
3300033434\|Ga0316613_10480238	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300033434\|Ga0316613_10667148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	711	Open in IMG/M
3300033480\|Ga0316620_11370164	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300033481\|Ga0316600_10493415	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300033482\|Ga0316627_100014317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	3868	Open in IMG/M
3300033483\|Ga0316629_10378662	All Organisms → cellular organisms → Bacteria → Proteobacteria	989	Open in IMG/M
3300033483\|Ga0316629_11541793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	542	Open in IMG/M
3300033485\|Ga0316626_11881462	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300033486\|Ga0316624_10407624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1139	Open in IMG/M
3300033487\|Ga0316630_10849773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	787	Open in IMG/M
3300033488\|Ga0316621_10281342	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300033488\|Ga0316621_10404043	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300033488\|Ga0316621_11436672	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300033513\|Ga0316628_100621408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	1410	Open in IMG/M
3300033521\|Ga0316616_100088222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	2671	Open in IMG/M
3300033521\|Ga0316616_100216907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter delicatus	1925	Open in IMG/M
3300033521\|Ga0316616_102045218	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300033557\|Ga0316617_100393899	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300033557\|Ga0316617_100595049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1025	Open in IMG/M
3300033557\|Ga0316617_101807220	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300034054\|Ga0373891_009141	All Organisms → cellular organisms → Bacteria → Proteobacteria	1304	Open in IMG/M
3300034075\|Ga0373895_013741	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300034128\|Ga0370490_0034233	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.16%
Host-Associated	Host-Associated	5.44%
Engineered	Engineered	3.40%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	48.98%
Terrestrial	Environmental → Terrestrial	42.18%
Plants	Host-Associated → Plants	5.44%
Wastewater	Engineered → Wastewater	2.04%
Bioremediation	Engineered → Bioremediation	1.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.18%
Freshwater	Environmental → Aquatic → Freshwater	38.78%
Marine	Environmental → Aquatic → Marine	6.80%
Sediment	Environmental → Aquatic → Sediment	3.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.04%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	1.36%
Metal	Engineered → Bioremediation → Metal	1.36%
Roots	Host-Associated → Plants → Roots	0.68%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.68%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	34.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.93%
Lake	Environmental → Aquatic → Freshwater → Lake	8.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.48%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.40%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.72%
Sediment	Environmental → Aquatic → Marine → Sediment	2.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.04%
Pond	Environmental → Aquatic → Freshwater → Pond	1.36%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	1.36%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.68%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	34.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.40%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.04%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.04%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.04%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.36%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.36%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	1.36%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.68%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.68%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	31.29%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	9.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.48%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.48%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.76%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.72%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	2.04%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.04%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.04%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.36%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.36%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.36%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	1.36%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.68%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.68%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.68%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.68%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.68%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.68%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.68%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004048	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005659	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009776	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG	Engineered	Open in IMG/M
3300010429	AD_USRAca	Engineered	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014312	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022214	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300024895	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025964	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026072	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026347	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU4	Environmental	Open in IMG/M
3300026349	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU6	Environmental	Open in IMG/M
3300026375	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS6	Environmental	Open in IMG/M
3300026782	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 (SPAdes)	Environmental	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032133	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA	Host-Associated	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034054	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.1	Engineered	Open in IMG/M
3300034075	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2	Engineered	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1094260991	3300000955	Soil	VKVQVRHSLKADVGSAFKLCTELKSQEAIYARLGGSDLRIKRGGRAPNVKLEISRRMPANPPGAIKRLVPATNEVAH
JGI10216J12902_1148939752	3300000956	Soil	MKIQIRHTLKTDVGSAFKLCTEQKAQEAVYAKLGGTDLKIKREGRAPHVKLRVSRRMPATPPAAIRKFVPATNDVSH
JGIcombinedJ13530_1051136241	3300001213	Wetland	MKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGTELKIKREGRAPNVKLRISRKEAANPPAAIRR
JGIcombinedJ13530_1092785041	3300001213	Wetland	MKVHVKHALKIDVATAFKLCTEQKSLEAIYAKLGGSDIKVKRGGRAPGVTLAISRKEPAKPPAA
Ga0031658_10264652	3300003860	Freshwater Lake Sediment	MKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGTELKIKREGRAPNVKLRISRKEAANPPAAIRRIVPSESEVS
Ga0031658_10319922	3300003860	Freshwater Lake Sediment	MKVHVKHTLKTDVASAFKLCTDQKHQETIYAQLGGSNVKIKRDGRAPNVKLAISRTEDANPPAAIR
JGI26437J51864_101237481	3300003910	Freshwater Lake Sediment	MKIQVXHSLKTDVGSAFKLCTEQKSQEXIYGKLPGTDVKIKREGRAPNVKLKIARKMPANPP
Ga0055494_100307291	3300004048	Natural And Restored Wetlands	MKVHVKHTLKTDVAAAFKLCTELKHQEAIYAQLGGTDVKIKREGRAPNVKLKISRHEVANPPAAIRKLVPATNEVSHTEDWAADGDGYAAAIV
Ga0066600_102018082	3300004155	Freshwater	MKVHVKHTIKSDVDSVFKLCTEQKHQESIYSQLGGTEVKIKREGRAPNVSLRISRKEAANPPAAIRRIVPSESEVSH
Ga0062589_1016579922	3300004156	Soil	MKLQVKHPLKTDVGSAFKLCTEQKSQEALYAKLPGSEVKIKREGRAPNVKLRISRKMPANPPAAIKRIVPATNDVSHTEAWS
Ga0055457_100707682	3300004266	Natural And Restored Wetlands	MKVHVKHTLKADVASVFKLCTEQKSQEAIYAGLGGSNVKIKREGRAPNVKLKISRSEPANPPAAIRRIVPSVNDVSHTENW
Ga0066599_1002186021	3300004282	Freshwater	MKVHVKHSLKTDVGSVFKLCTELKSQEAVYAELGGTDVKVKRDGRAPSVKLRVSRKEPANPP
Ga0062592_1007957841	3300004480	Soil	MKVQVKHSLKTDVGAVFKLCTELKSQEAIYAQLGGSDVRIKRGGRAPNVKLEVSRKMPANPPGALKR
Ga0062591_1014300511	3300004643	Soil	VKVQVRHSLKTDVGSAFKLCTELKSQQAIYAQLGGTDLKIKRGGRAPNVKLEISRRMPANPPGA
Ga0062378_101476791	3300004780	Wetland Sediment	MKVHVKHTIKSDIASVFKLCTEQKHQESIYSQLGGTELKIKREGRAPNVKLRISRKEAANPPAAIRRIV
Ga0062381_103494962	3300004808	Wetland Sediment	MKVHVKHAIKSDVASVFKLCTEQKHQESIYSQLGGTELKVKREGRAPNVKLRISRKEAANPPA
Ga0068867_1013414922	3300005459	Miscanthus Rhizosphere	LKIQVKHSLKTDVGSLFKLCTEQKSQEAIYSKLGGTDLKIRREGRAPNVRLKVSRRMPASPPAAL
Ga0073900_103246412	3300005659	Activated Sludge	MKIQVRHSLKTDVDSAFKLCTEQKSQEAIYGKLPGTDVKIKREGRAPNVKLKIARKMPANPPAAIKRLVPS
Ga0074469_109198532	3300005832	Sediment (Intertidal)	MKVHVKHTLKTDVAAAFKLCTELKHQEAIYAQLGGTDVKIKREGRAPNVKLKISRNEVANPPAAI
Ga0079037_1001324401	3300006224	Freshwater Wetlands	MKVHVKHSLKTDVAAAFKLCTEQKSQEQVYAKLGGSDLKIKREGRAPNVQLRISRKMPANPPAAIRRIV
Ga0079037_1005197372	3300006224	Freshwater Wetlands	MKVHVKHTIKSDVASVFKLCTEQKHQEAIYSELGGTELKIKREGRAPNVKLRISRKEAANPPAAIRRIVPSESEVSHTE
Ga0079037_1011058012	3300006224	Freshwater Wetlands	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAAIKRLVPS
Ga0079037_1014572061	3300006224	Freshwater Wetlands	MKIHVKHTLKTDVASAFKLCTEQKSQESIYAKLGGSDVTIKRDGRAPNVKLRISRTEPANPPAAIRKIVPSTTEVSH
Ga0079037_1017777571	3300006224	Freshwater Wetlands	VAVDVNVRKSLKAKVDEAFKVFTEQKSQEEIYAKLPGTDVRIKREGRAPNVRLKVSRKMPASAPGPIKR
Ga0068871_1016945951	3300006358	Miscanthus Rhizosphere	MKVQVRHSLKTDVGSAFKLCTELKSQEAIYARLGGSDLRIKRGGRAPNVKLEISRRMPANPPGAI
Ga0075431_1015987431	3300006847	Populus Rhizosphere	MKVHVKQSLKTNVASALKLCTEQKSQEAVYAKLPGSNVRIKREGKAPNARLRVSRTMPANPP
Ga0075419_103867511	3300006969	Populus Rhizosphere	MKVHVKQSLKTAVTSALKLCTDQKRQEAVYAKLPGSNVRIKREGRAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTEAWRA
Ga0105098_105241742	3300009081	Freshwater Sediment	MKVHVKHSLKTDAAAAFKLCTELKSQEQVYAQLGGSDVKIKRDGRAPNVKLKISRREEANPPAAIRRLVPATNEVSHTEDWGADGD
Ga0105103_102415351	3300009085	Freshwater Sediment	MKVHVKHALKTDVASAFKLCTEQKSQEQVYAQLGGTDVKIKREGRAPNVKLKISRKEVANPPAAIKRLVPA
Ga0105103_107174362	3300009085	Freshwater Sediment	MKVHVKHSLKTDVAAAFKLCTEQKSQEQVYAKLGGSDLKIKREGRAPNVQLRISRKMPANPPAAIRRIVPSTNEVSHVE
Ga0102851_115835591	3300009091	Freshwater Wetlands	MKVHVKHTLKTDVAAALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAAIRKLVPSTNEVSHTEDWAADGDGYSADIAIDIK
Ga0102851_125156631	3300009091	Freshwater Wetlands	MKVHVKHTLKTDVASAFKLCTELKSQDEIYAQLGGTEVKIKREGRAPNVKLKISRRELANPPAAIRKL
Ga0115026_108705381	3300009111	Wetland	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKREGRSPNIKLKVSRKEVANPPAAIKRLVP
Ga0115026_109081962	3300009111	Wetland	MKVHVKHTLKTDVASAFKLCTDQKHQETIYAQLGGSNVKIKRDGRAPNVKLAISRTEDANPPAAIRKLVPSESVVSHTEDW
Ga0115026_115891692	3300009111	Wetland	MKVHVKHTLKTDVASALKLCTELKSQEAIYAKLGGSDVRIKREGRTPNVKLRISRREVAN
Ga0115027_112279772	3300009131	Wetland	MKVHVKHSLKTDVGSALKLCTEQKHQENVYAQLGGSDVKIKREGRSPNVTLRISRKEVANPPAAIRKLVPATNEVSHTEDWSADGDGYAAD
Ga0115027_116767612	3300009131	Wetland	MKVHVKHSLKTDVATAFKLCTEVKHQEDIYGQLGGTDLKIKREGRAPNVKLRISRKEVANPPAAIRKLVPST
Ga0111538_124275171	3300009156	Populus Rhizosphere	MKVQVKHSLKTDVGSLFKLCTEQKSQEAIYSKLGGSELKIRREGRAPLVRLKVSRRMPANPPAAIRKLVPATSDVAHSEQWAA
Ga0105092_101462131	3300009157	Freshwater Sediment	MKVRVKQSLKTNVASALKLCTDQKSQEAVYAKLPGSNVRIKREGKAPNLRLRVSRTMPANPPAAIKRL
Ga0113563_103228403	3300009167	Freshwater Wetlands	MKVHVKHTLKTDVASAFKLCTELKSQDEIYAQLGGTEVKIKREGRAPNVKLKISRKEV
Ga0113563_110923701	3300009167	Freshwater Wetlands	MKVHVKHSLKTDVAAAFKLCTEQKSQEQVYAKLGGSDLKIKREGRAPNVQLRISRKMPANPPAAI
Ga0113563_113231752	3300009167	Freshwater Wetlands	MKIQVKHSLKTDVDSAFKLCTEQKSQEAIYGKLPGTDVKIKREGRAPNVKLKIARKMPANPPAAIKRLVP
Ga0113563_114878031	3300009167	Freshwater Wetlands	MKVHVKHTIKSDVASVFKLCTEQKHQEAIYSELGGTELKIKREGRAPNVKLRISRKEAANPPAAIRRIVPSESE
Ga0113563_117821962	3300009167	Freshwater Wetlands	MKIHVKHNLKTDVASAFKLCTEQKSQESIYAKLGGSDVKIKRDGRAPNVKLRISRTEPANPPAAIRRIVPSTTEVSHTE
Ga0113563_130506182	3300009167	Freshwater Wetlands	MKVHVKHSLKTDVGSAFKLCTEQKSQEAVYAELGGTDVKVKRDGRAPNVKLRISRKEPANPPAAIRKFVPGTSEVSHSED
Ga0105097_104062082	3300009169	Freshwater Sediment	MKIEVKHSLKADVGAAFKLCTEQKSQEAVYGKLGGTDLKIKREGRAPNVRLKIARKMPANPPAAIRRLVPPTNEVSHTEDWSA
Ga0105096_101469672	3300009170	Freshwater Sediment	MKVHVKHTLKTDVASALKLCTDQKHQETIYDRLGGSDVSIKRDGRSPNVRLRISRKEPASPPAAIRKFVPS
Ga0105096_102792501	3300009170	Freshwater Sediment	MKVHVKHTLKTDVASAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVSHTEDWAAEGD
Ga0105340_14587431	3300009610	Soil	MKLQVKHPLKTDVGSAFKLCTEQKSQEALYAMLPGSEVKIKREGRAPNVKLRISRKMPANPPAAIKRIVPATND
Ga0116154_103421162	3300009776	Anaerobic Digestor Sludge	MKVHVKHSLKTDVASAFKLCTDQKNQEEIYAQLGGTDLKIKREGRAPNVKLKISRRELAN
Ga0116241_103345051	3300010429	Anaerobic Digestor Sludge	MKVHVKHSLKTDAAAAFKLCTELKSQEQVYAQLGGSDVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVTHTEDWAAD
Ga0137427_101160302	3300011445	Soil	MKVNVKQSLKTDVASALKLCTDQKSQEAVYAKLPGSNLKIKRDGKAPNVRLRVSRTMPANPPAAI
Ga0157310_100213572	3300012916	Soil	MKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVRIKREGKAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTE
Ga0075313_10868402	3300014267	Natural And Restored Wetlands	MKVHVKHSLKTDLASAFKLCTDQKSQEQVYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEV
Ga0075331_12053512	3300014310	Natural And Restored Wetlands	MKVQVRHSLKADVGAAFKLCTEQKSQEGVYAKLPGSDVRIKREGRAPNVKLRISRKMPAN
Ga0075345_10358851	3300014312	Natural And Restored Wetlands	MKVHVKHSLKADVASVFKLCTEQKSQEAIYAGLGGSDVKIKREGRAPNVKLKISRREPANPPAA
Ga0180104_10904171	3300014884	Soil	MKIQIKHPLQADVGAAFKLCTEQKNQEAIYGKLGGTGVSIKRSGRTPNVKLDISRRMPANPPASIRRFVPATNEVAHSEDWAADGEGYVADIVVEIR
Ga0180067_10364681	3300015257	Soil	MKVNVKQSLKTDVASALKLCTDQKSQEAVYAKLPGSNLKIKREGKAPNVRLRVSRTMPANPPAAIQRLVPVTHEVSHTQAWRVDGKGHV
Ga0190272_131528202	3300018429	Soil	MKVNVKQGLKTDVASALKLCTDQKSQEAVYAKLPGSNLKIKREGKAPNVRLRVSRTMPANPPAAIKRLVPATSEVFHT
Ga0190271_127457341	3300018481	Soil	MKLQVKHPLKTDVGSAFKLCTEQKSQEAVYAKLPGSEVKIKREGRAPNVRLRISRKMPANPPAAIKRIVPATNDVSHTEAW
Ga0207193_16927101	3300020048	Freshwater Lake Sediment	MKVHVKHSLKTDVAAAFKLCTEQKSQEQVYAKLGGSDLKIKREGRAPNVQLRISRKMPAN
Ga0210334_100129031	3300021859	Estuarine	MKVHVKHSLKADVASVYKLCTDQKSQEAIYAGLGGSNVKIKREGRAPNVKLKISRSEPANPPAAIRRIVPSV
Ga0222714_103888411	3300021961	Estuarine Water	MKVHVKHSLKTDVGSALKLCTDQKHQETIYDKLGGTDLRIKREGRSPNIKLRISRKEVANPPAAIRKLVPGTNEVSHTEDWAADGDGYA
Ga0224500_101477722	3300022213	Sediment	MKIQVKHSLKTDVGAAFKLCTEQKAQEAVYAKLGGSDLKIRREGRAPSVVLRISRKMPANPPAAIKRLVPATNDVSHTE
Ga0224500_101772982	3300022213	Sediment	MKVHVKHTLKTDVAAAFKLCTELKHQEAIYAQLGGTDVKIKREGRAPNVKLKITRNEVAN
Ga0224505_101116463	3300022214	Sediment	MKIQVRHSLKTDVDSAFKLCTEQKSQETIYRKLPGTDVKIKREGRAPNVKLKIARRMPANPPAAIKRIVPATNDVSHTE
Ga0247743_10156841	3300023067	Soil	MKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVRIKREGKAPNARLRVSRTMPANPPAAIKRLVPATN
Ga0124853_10882752	3300024056	Freshwater Wetlands	MKVHVKHSLKTDAASAFKLCTELKSQEQVYAQLGGSDVKIKRDGRAPNVKLKISRKEVANPPAAIRKLVPATNEVSHTE
Ga0208508_10636951	3300024895	Freshwater Sediment	MKIQVKHSLKTDVGSAFKLCTEQKSQEAIYGKLPGTDVKIKREGRAPKVKLKIARKMPANPPAV
Ga0207642_104208532	3300025899	Miscanthus Rhizosphere	LKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVRIKREGKAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTEAWRAD
Ga0210127_10232391	3300025964	Natural And Restored Wetlands	MKVHVKHSLKTDVGSALKLCTDQKHQETIYDKLGGTDLRIKREGRSPNIKLRISRKEVANPPAAIRKLVPGTNEVSHTEDWAADGDGYAADI
Ga0208292_10266472	3300026072	Natural And Restored Wetlands	MKVHVKHSLKADVASVFKLCTEQKSQEAIYAGLGGSDVKIKREGRAPNVKLKISRREPANPPAAIRRIVPS
Ga0256809_10164382	3300026347	Sediment	MKIHVKHSLKTDVASALKLCTELGNQEAIYARLGGTDVEIKREGRSPKVRLRISRKEAVNPPAAIRRLVPSTNHVSHTEAWSADGEGYCAD
Ga0256811_10443321	3300026349	Sediment	MKIHVKHSLKTDVASALKLCTELGNQEAIYARLGGTDVEIKREGRSPKVRLRISRKEAVNPPAAIRRLVPSTNHVSHTEAWSADGDGYCADIAI
Ga0256803_10207471	3300026375	Sediment	MKIHVKHSLKTDVASALKLCTELGNQEAIYARLGGTDVEIKREGRSPKVRLRISRKEAVNPPAAIRRLVPSTNHVSHTEAWS
Ga0207595_1011251	3300026782	Soil	MKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVHIKREGKAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTEAWRAD
Ga0209981_10251202	3300027378	Arabidopsis Thaliana Rhizosphere	MKVHVKQSLKTDVTSALKLCTDQKRQESVYAKLPGSNVRIKREGKAPNVRLRVSRTMPANPPAAI
Ga0209392_11077472	3300027683	Freshwater Sediment	MKIQVKHSLKTDVAAAFKLCTEQKAQEAVYAKLGGADLKIKREGRAPNVVLRISRKMPANPPAALKRL
Ga0209392_11246941	3300027683	Freshwater Sediment	MKVHVKHTLKTDVASALKLCTDQKHQETIYDRLGGSDVSIKRDGRSPNVRLRISRKEPASPPAAIRKFVP
Ga0209286_11897621	3300027713	Freshwater Sediment	MKVHVKHTLKTDVASALKLCTDQKHQEAVYEQLGGSDVKIKREGRSPNVRLRISRKEVANPPAAIRKL
Ga0209397_103577992	3300027871	Wetland	MKVHVKHTLKADVATAFKLCTDQKHQEEIYSQLGGSDLKIKREGRAPNVTLRISRTEPSNPPAAIRRIVPSTSDVHHTE
Ga0209293_104758631	3300027877	Wetland	MKVHVKHTLKTDVASAFKLCTDQKHQETIYAQLGGSNVKIKRDGRAPNVKLAISRTEDANPPAAIRKLVPSESVVSHTEDWS
Ga0209254_101001444	3300027897	Freshwater Lake Sediment	MKIQVKHSLKTDVGSAFKLCTEQKSQEAIYGKLPGSDVKIKREGRAPNVRLKIARKMPANPPAAIKRLVPATNEVSHTEDWAADGDGYAAD
Ga0209391_101011901	3300027975	Freshwater Sediment	MKVHVKHTLKTDVASAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVSHTEDWAADGDGYSADIVTEIK
Ga0315899_114315572	3300031784	Freshwater	MKVHVKHTLKTDAASALKLCTELRNQEAIYGQLGGTDIKIKRDGRSPNVKLKISRKEVANPPAAIRKLVPR
Ga0315290_100594191	3300031834	Sediment	MKVHVKRTLKTDVGAAFKICTEQKSQEAVYARLPGSDVKIKREGRAPNVKLRISRRMPANPPAAIRRLVPATNEV
Ga0315284_111001251	3300032053	Sediment	MKIQVKHSLKTDVGSAFKLCTEQKSQEAIYGKLPGTDVKIKREGRAPKVKLKIARKMPANPPPVLKRIVPATNEVSHTEDWAADGDGYAADIVV
Ga0310895_100418192	3300032122	Soil	MKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVRIKREGKAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTEAW
Ga0316583_103078162	3300032133	Rhizosphere	MKIHVKHPLKTDVDSAFKLCTEQKNQETVYSKLNCENPRIKREGRAPNVKLRISRVVPATSPAAIRRLVPATNEVSHSEDWGRDGDGYSSEIRIE
Ga0315295_116182092	3300032156	Sediment	VKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGSEIKIKREGRAPNVKLRISRKEAANPPAAIRRIVP
Ga0315283_103255323	3300032164	Sediment	MKIQVKHPLKTDVGSAFKLCTEQKSQEAVYAKLPGADVKIKREGRAPNVTLRISRKMPANPPAVLK
Ga0315283_109194932	3300032164	Sediment	MKIQVKHSLRTDVGSAFKLCTEQKSQEAIYGKLPGTDVKIKREGRAPNVKLKIARKMPANPPPVLKRIV
Ga0315283_122329491	3300032164	Sediment	MKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGAEIKIKREGRAPNVKLRISRKEAANPPAAIRRIVPSESE
Ga0315287_110778221	3300032397	Sediment	MKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGSEIKIKREGRAPNVKLRISRKEAANPPAAIRRI
Ga0315287_117231462	3300032397	Sediment	MKVQVKHSLKTDVGAAFKLCTEQKSQETVYSKLPGSDVKIKREGRAPNVKLRISRRMPANPP
Ga0315275_113268532	3300032401	Sediment	MKVHVKHTIKSDVASVFKLCTEQKHQESIYSQLGGSEIKIKREGRAPNVKLRISRREAANPPAAIRRIVPSDSE
Ga0315273_100295121	3300032516	Sediment	MKVHVKHGLKADVASVFKLCTEQKSQEAIYAGLGGSDVKIKREGRAPNVRLHISRKEPANPPA
Ga0315273_104978181	3300032516	Sediment	MKIQVKHPLKTDVGSAFKLCTEQKSQEAVYAKLPGADVKIKREGRAPNVTLRISRKMPANPPSALKRIVPATNDVSH
Ga0316604_103282192	3300033406	Soil	MKVHVKHSLKTDAASAFKLCTELKSQEQVYAQLGGSDVKIKRDGRAPNVKLKISRKEVANPPAAIRRLVP
Ga0316604_104452322	3300033406	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPP
Ga0316605_109522562	3300033408	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAA
Ga0316605_113462701	3300033408	Soil	MKIQVRHSLKTDVDSAFKLCTEQKSQEAIYARLPGTDVKIKREGRAPNVKLKIARKMPANPPAAIKRLVPSTNEV
Ga0316605_115735441	3300033408	Soil	MKVHVKHTLKTDVASAFKLCTELKSQDEIYAQLGGTDVKIKREGRAPNVKLKISRRELANPPAAIRKLVPSTNDVSHTEDWGADGDGYAADLA
Ga0316605_117673792	3300033408	Soil	MKVHVKHTLKTDLASAFKLCTELKSQEQIYAQLGGTDVKIKREGRAPNVKLRISRKEVANPPAAIKKLVPATNDVSHTED
Ga0316605_120172042	3300033408	Soil	MKVHVKHSLKTDVATAFKLCTEVKHQEDIYGQLGGTDLKIKREGRAPNVKLRISRKEVANPPAAIRKLVPSTNDVSHTEDWAADGDGYGADIVIDIRGV
Ga0316605_120834811	3300033408	Soil	MKVQVKHSLKTDVGAAFKLCTEQKSQETIYSKLPGSDLKIKREGRAPNVKLRISRKMPANPPAAIRKIVPSTNDVSHSEDWAADG
Ga0316605_121319822	3300033408	Soil	MKVHVKHSLKTDVAAAFKLCTEQKAQEQVYAKLGGSDLRIKREGRAPNVQLRISRKMPANPPAA
Ga0316603_105548242	3300033413	Soil	MKVHVKHSLKTDVASALKLCTEQKHQENVYAQLGGSDVKIKREGRSPNVTLRISRKEVAN
Ga0316603_115127012	3300033413	Soil	MKVHVKHTLKADVATAFKLATDLKHQEAIYAELGGSNVKIKREGRAPNVRLLISRTEPSNPPAAIRRIVPSVSEVSHTEVWAEDGD
Ga0316603_115722731	3300033413	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPS
Ga0316603_116654931	3300033413	Soil	MKVHVKHTLKTDVAAALKLCTELKSQEAIYAQLGGSDVRIKRDGRSPNVRLAISRKEAANPPAAIRKLVPSTTEVSHTEDWAADGDGYSSDIAIDIK
Ga0316619_109521041	3300033414	Soil	MKVHVKHTLKTDVAAALKLCTELKSQEAIYAQLGGSDVRIKRDGRSPNVRLAISRKEAANPPAAIRKLVPSTTEVSHTEDWAADGDGYSSDIAI
Ga0316619_116128262	3300033414	Soil	MKVQVKHSLKTDVASAFKLCTEQKSEEAIYARLGGTDVKIKREGRAPNVTLTVSRKEPANPPAAIRRIVPSVNEVTHT
Ga0316622_1003227043	3300033416	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVTHTEDWA
Ga0316625_1000380381	3300033418	Soil	MKVHVKHTIKSDVTTVFKLCTEQKHQESIYSQLGGTDVKIKREGRAPNVSLRISRKEAANPP
Ga0316625_1006032331	3300033418	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAAIKRL
Ga0316601_1000272305	3300033419	Soil	MKIQVKHPLKTDVGSAFKLCTEQKSQEAVYAKLPGSDVKIKREGRAPNVKLRISRKMPANPPAALKRIVPATNDVSHT
Ga0316601_1001297254	3300033419	Soil	MKVHVKHTLKADVATAFKLCTDQKHQEEIYSQLGGSDLKIKREGRAPNVTLRISRTEP
Ga0316601_1002039771	3300033419	Soil	MKVHVKHTLKTDVASAFKLCTDQKHQETIYAQLGGSNVKIKRDGRAPNVKLAISRTED
Ga0316601_1003718773	3300033419	Soil	MKVHVKHTIKSDVASVFKLCTEQKHQEAIYSELGGTELKIKREGRAPNVKLRISRKEAANPPA
Ga0316601_1005604782	3300033419	Soil	MKVHVKHSLKTDVATAFKLCTEVKHQEDIYGQLGGTDLKIKREGRAPNVKLRISRKEDAN
Ga0316601_1011652442	3300033419	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVTHTEDWAAD
Ga0316601_1017248852	3300033419	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKREGRSPNIKLKVSRKEVANPPAAIKRLVPSVNEVSHTEDWAADGDGYSA
Ga0316613_104576141	3300033434	Soil	MKVHVKHTLKTDLASAFKLCTELKSQEQIYAQLGGTDVKIKREGRAPNVKLKISRKEVANPPAAIKKLVPATNDVSHTEDWAEDGDGYS
Ga0316613_104802382	3300033434	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEV
Ga0316613_106671482	3300033434	Soil	MKVHVKHTLKTDVASAFKLCTELKSQDEIYAQLGGTEVKIKREGRAPNVKLKISRRELANPPAAIRKLVPSTNDVSHTEDWGADGDGYAADI
Ga0316620_113701642	3300033480	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVAN
Ga0316600_104934151	3300033481	Soil	MKVHVKHSLKTDVAAAFKLCTEQKAQEQVYAKLGGSDLKIKREGRAPNVQLRISRKMPAN
Ga0316627_1000143175	3300033482	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVRIKRDGRSPNVKLKISRKEVANPPAAIRKLVPSTNEVSHTEDWAADGDGYSADIAIDIK
Ga0316629_103786621	3300033483	Soil	MKVHVKHTLKTDVDSALKLCTDQKHQEAIYAQLGGTDLRVKRDGRSPNIKLKISRKEVANPPAAIRKLVPSTSEVSHTED
Ga0316629_115417932	3300033483	Soil	MKIQVKHPLKTDVGSAFKLCTEQKSQEAVYAKLPGSDVKIKREGRAPNVKLRIARKMPANPPAALKRIVPATNDVSH
Ga0316626_118814621	3300033485	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNIKLKVSRKEVANPPAAIKRLVPS
Ga0316624_104076241	3300033486	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAAIKRLVPSVNEVSHTEDWAADGNGYSA
Ga0316630_108497731	3300033487	Soil	MKIQVRHSLKTDVDSAFKLCTEQKSQEAIYARLPGTDVKIKREGRAPNVKLKIARKMPANPPAAIKRLVPSTNEVSHTEDWAADGKGYSA
Ga0316621_102813423	3300033488	Soil	MKVQVKHSLKADVGAAFKLCTEQKSQEAVYAKLPGTNVKIKREGRAPNVKLQVSRKMPANPPAAI
Ga0316621_104040431	3300033488	Soil	MKVHVKHTLKTDVDSALKLCTDQKHQEAIYAQLGGTDLKVKRDGRSPNIKLKISRKEVANPPAAIRKLVPSTSEVSHTED
Ga0316621_114366722	3300033488	Soil	MKVHVKHTLKTDVASAFKLCTELKSQESVYAKLGGSDVTIKREGRAPNVKLRISRTEPANPPAAIRRI
Ga0316628_1006214083	3300033513	Soil	MKVHVKHTLKTDVASAFKLATELKNQEEIYAQLGGTDVKIKREGRAPNVKLKISRRELANPPAAIRKLVPST
Ga0316616_1000882221	3300033521	Soil	MKVHVKHTLKTDLATAFKLCTELKHQEQIYAQLGGTHVKIKRDGRAPNVKLKISRTEVAN
Ga0316616_1002169071	3300033521	Soil	MKVHVKHSLKTDVGSALKLCTEQKHQEAVYAQLGGSDVKIKREGRSPNVTLRISRKEVANPPAAIRKLVPATNEVSH
Ga0316616_1020452182	3300033521	Soil	MKVHVKHTLKTDVASALKLCTELKSQEEIYAQLGGTDVKIKRDGRSPNVKLKVSRKEVANPPAAI
Ga0316617_1003938993	3300033557	Soil	MKVHVKHTLKTDVASAFKLCTDQKHQETIYAQLGGSNVKIKRDGRAPNVKLAISRTEDANPPAAIRKLVPSES
Ga0316617_1005950492	3300033557	Soil	MKVHVKHTLKTDVAAAFKLCTELKHQEQIYAQLGGTNVKIKRDGRAPNVKLKISRTEVANPPAAIKRLVPSTNEVTHTEDW
Ga0316617_1018072201	3300033557	Soil	MKVQVKHSLKTDVASAFKLCTEQKSEEAIYARLGGTDVKVKREGRAPNVTLTISRKEPANPPAAIRR
Ga0373891_009141_3_248	3300034054	Sediment Slurry	MKIEVKHSLKADVGAAFKLCTEQKSQEAVYARLGGTDLKIKREGRAPNVKLKIARKMPANPPAAIRKLVPPTNEVSHTEDWS
Ga0373895_013741_3_191	3300034075	Sediment Slurry	MKVHVKHTLKADLASVFKLCTDQKHQEEIYSQLGGSNVKIKREGRAPNVKLTISRTEPSNPPA
Ga0370490_0034233_2_178	3300034128	Untreated Peat Soil	MKIQVKHPLKTDVGSAFKLCTDQKSQEAVYAKLPGADVKIKREGRAPNVKLRISRKMPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049078

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences