7000000745: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764083206

Overview

Basic Information

• IMG/M Taxon OID: 7000000745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053339 | Ga0031249
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764083206
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126878705
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	2
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F053092	Metagenome	141	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F097490	Metagenome	104	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C5821170	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	516
C5824716	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	524
C5854192	Not Available	604
C5870160	Not Available	662
C5875542	Not Available	686
C5882116	Not Available	719
C5889444	Not Available	761
C5896289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	807
C5918215	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1025
C5926700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1166
C5934526	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1353
C5938221	All Organisms → Viruses → Predicted Viral	1476
C5947295	All Organisms → cellular organisms → Bacteria	1957
C5954502	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2931
C5959146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	5331
SRS015434_WUGC_scaffold_12500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1750
SRS015434_WUGC_scaffold_23472	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1587
SRS015434_WUGC_scaffold_40665	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1214
SRS015434_WUGC_scaffold_43954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	513
SRS015434_WUGC_scaffold_46819	All Organisms → Viruses → Predicted Viral	2311
SRS015434_WUGC_scaffold_7420	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1240

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5821170	C5821170__gene_148814	F046432	MWEMTESKLSNIISKYQLPMDDYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGIESELECYREGGFDNLEAIPRKIETLENASDADDEISK
C5824716	C5824716__gene_150650	F095629	CLIGCFGIVNANNVEQPKEVKIVHNDDSVILHKKIYQLEKRVERLEELLKKEGKL
C5854192	C5854192__gene_166421	F105378	NKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE
C5870160	C5870160__gene_175342	F099452	NNRDRGKALTIFIGERLNRELILSSMNIFNLYKDIINLDDVLLLTELRETEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
C5875542	C5875542__gene_178447	F071328	LIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW
C5882116	C5882116__gene_182260	F099453	ELAQQTLTFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYVSLEAFADTVEAHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQSRLANLTNVVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA
C5889444	C5889444__gene_186606	F103430	MIEQITIKAFIGSNNKTKELEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIESDLQLI
C5896289	C5896289__gene_190822	F097490	LLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKNIETMTIKM
C5918215	C5918215__gene_205105	F105379	LSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
C5926700	C5926700__gene_211199	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFIHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVITMVYEYNK
C5934526	C5934526__gene_217316	F080165	MKNKKFILGILLSLIACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEDMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLSYTFTRFILK
C5938221	C5938221__gene_220396	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYEKPMTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
C5947295	C5947295__gene_228933	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPEEEKVMPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTPDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILNLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
C5954502	C5954502__gene_237439	F061925	MSWEYSINLDSEEAVSSVVTDLRICELFSSSTTDYIDWKNPESIYAIAYDIRFYTDKEKTIYITINSFSKNIFSALKSILAKHSYFLTDCDTDEEVTLEHIFRSVI
C5959146	C5959146__gene_245069	F063777	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFGILLLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLGFDSETKTINGYNNKEQIEIAISE
SRS015434_WUGC_scaffold_12500	SRS015434_WUGC_scaffold_12500__gene_10291	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS015434_WUGC_scaffold_23472	SRS015434_WUGC_scaffold_23472__gene_19134	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFKGGRSMASNVLLPGSAH
SRS015434_WUGC_scaffold_40665	SRS015434_WUGC_scaffold_40665__gene_36321	F040149	VAYEGAEELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVA
SRS015434_WUGC_scaffold_43954	SRS015434_WUGC_scaffold_43954__gene_41334	F094007	MELKTAEVLDLARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDVNSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCI
SRS015434_WUGC_scaffold_46819	SRS015434_WUGC_scaffold_46819__gene_47778	F105376	MNKNNEQPEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQSQLKTYIAEHEKEAEEKYVKRTEVEGVMNFWKLVTSNLAKLFALALVGLAIYATNNLIQQNKAVTELKEEVQTQVRSK
SRS015434_WUGC_scaffold_7420	SRS015434_WUGC_scaffold_7420__gene_6162	F045567	MRQRDGRDTLTEELKGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATINEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR