7000000744: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764083206

Overview

Basic Information

• IMG/M Taxon OID: 7000000744
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053338 | Ga0027938
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764083206
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27836337
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
Not Available	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F047508	Metagenome	149	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1737471	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1914
SRS015436_WUGC_scaffold_10522	Not Available	518
SRS015436_WUGC_scaffold_14991	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	508
SRS015436_WUGC_scaffold_18708	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1236
SRS015436_WUGC_scaffold_19512	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	528
SRS015436_WUGC_scaffold_3308	All Organisms → Viruses → Predicted Viral	2071

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1737471	C1737471__gene_56112	F081456	MFEEPLIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAD
SRS015436_WUGC_scaffold_10522	SRS015436_WUGC_scaffold_10522__gene_9268	F047508	SFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCVLIPSSP
SRS015436_WUGC_scaffold_14991	SRS015436_WUGC_scaffold_14991__gene_13816	F071329	MRPLYSKGMLMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS015436_WUGC_scaffold_18708	SRS015436_WUGC_scaffold_18708__gene_18318	F018385	MMAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGQCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS015436_WUGC_scaffold_19512	SRS015436_WUGC_scaffold_19512__gene_19665	F027205	LKAVKESEAFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYILDEYDIPRRIKRSTK
SRS015436_WUGC_scaffold_3308	SRS015436_WUGC_scaffold_3308__gene_2578	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYARRTTKLRIVTDPTTGEQKYLLDHIKAMHID