7000000743: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525

Overview

Basic Information

• IMG/M Taxon OID: 7000000743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053337 | Ga0027935
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16807331
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051214	Metagenome	144	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C754666	All Organisms → Viruses → Predicted Viral	3661
C754736	All Organisms → Viruses → Predicted Viral	3884
SRS015154_WUGC_scaffold_6556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2714

Sequences

Scaffold ID	Protein ID	Family	Sequence
C754666	C754666__gene_30476	F067846	SKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
C754736	C754736__gene_30549	F051214	FFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
SRS015154_WUGC_scaffold_6556	SRS015154_WUGC_scaffold_6556__gene_6366	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVKEDPKYKELDSKLKETELKNL