7000000742: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136

Overview

Basic Information

• IMG/M Taxon OID: 7000000742
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053336 | Ga0031016
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102666880
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F080165	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS015044_WUGC_scaffold_13549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2762
SRS015044_WUGC_scaffold_31963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1146
SRS015044_WUGC_scaffold_41759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1786
SRS015044_WUGC_scaffold_62280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	533
SRS015044_WUGC_scaffold_68672	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1081
SRS015044_WUGC_scaffold_69642	Not Available	1243
SRS015044_WUGC_scaffold_7263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17759

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS015044_WUGC_scaffold_13549	SRS015044_WUGC_scaffold_13549__gene_13228	F063778	MPETISEGAKQQLLQQLQNALGLVKDADTSAQDVAAITHSAADGHQLTQVMLQELTTAREYLKACADQINYAISNIEAIPIDPPPGD
SRS015044_WUGC_scaffold_31963	SRS015044_WUGC_scaffold_31963__gene_34350	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS015044_WUGC_scaffold_41759	SRS015044_WUGC_scaffold_41759__gene_46852	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWMINTENKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR
SRS015044_WUGC_scaffold_62280	SRS015044_WUGC_scaffold_62280__gene_76051	F030786	SLQLLLKNGSATKGGNAMGAKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS015044_WUGC_scaffold_68672	SRS015044_WUGC_scaffold_68672__gene_87490	F061927	MKNSIFILSVMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
SRS015044_WUGC_scaffold_69642	SRS015044_WUGC_scaffold_69642__gene_89820	F054109	MAGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDLSLSSYINKAVLEKVERDEKSEN
SRS015044_WUGC_scaffold_7263	SRS015044_WUGC_scaffold_7263__gene_6789	F054109	MIKEKINMTGRPKSKRGVKVHTAFKIYPKDKERAQAMAEKLDISLSSYINKAVLEKLAHDEKSEA