7000000741: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056

Overview

Basic Information

• IMG/M Taxon OID: 7000000741
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053335 | Ga0031247
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68178890
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077404	Metagenome	117	N
F092229	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3538580	Not Available	887
C3543420	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	971

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3538580	C3538580__gene_95928	F092229	MLECMMNVNSVVRTKIYEDYEFAKDVAERRFGSTIEDLDMVTILQKCATRPYNSILNNIYFRYFNSKLIDDLFKLAESPKILDLAIEYNCDYYAVNTAKTTVRRYFPDIYYNKFAIDSTIITSCRSLNDPQVNAVKSAEFTYELLMASRAEEFTPEIVRNIFIKYGLKPNPSRNVYNRINNNLNLFYYIEDYLEEYREEGKFIYGTKEYKISKDLRRLPLMLILTQLTRKNNSGYILNSNLELVKG
C3543420	C3543420__gene_99130	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTD