7000000737: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000737
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053331 | Ga0031341
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107393833
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F092230	Metagenome	107	N
F095630	Metagenome	105	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2677863	Not Available	733
C2699701	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1002
SRS050669_LANL_scaffold_20269	Not Available	7984
SRS050669_LANL_scaffold_21019	All Organisms → cellular organisms → Bacteria → Proteobacteria	5261
SRS050669_LANL_scaffold_32275	All Organisms → Viruses → Predicted Viral	1148
SRS050669_LANL_scaffold_33478	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1357
SRS050669_LANL_scaffold_54734	All Organisms → cellular organisms → Bacteria	10715
SRS050669_LANL_scaffold_62477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	2879
SRS050669_LANL_scaffold_68470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3964
SRS050669_LANL_scaffold_68488	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3246

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2677863	C2677863__gene_156776	F055792	SLFVEGQGVEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWSRHPLETLQKEGYILFEGSMLPCKACRVDPRSSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS
C2699701	C2699701__gene_162839	F046433	PVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRCHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYGLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS050669_LANL_scaffold_20269	SRS050669_LANL_scaffold_20269__gene_27064	F054109	MVGRPKSKRGVKVHTAFKIYPDDKARAQAMAEKLDMSLSSYINKAVLEKVVRDEKSEN
SRS050669_LANL_scaffold_21019	SRS050669_LANL_scaffold_21019__gene_28120	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFSGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSAIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADCVVKRTVKYE
SRS050669_LANL_scaffold_32275	SRS050669_LANL_scaffold_32275__gene_44094	F045567	MRQRDGRDTLTEELEGDITPLLYRTEGEARRPWVGMVTEDVVHTSTHRVEDTLLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS050669_LANL_scaffold_33478	SRS050669_LANL_scaffold_33478__gene_45777	F051211	CVLLKQELQHIGVTSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS050669_LANL_scaffold_54734	SRS050669_LANL_scaffold_54734__gene_78640	F071327	HKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG
SRS050669_LANL_scaffold_62477	SRS050669_LANL_scaffold_62477__gene_92191	F092230	MRQAHKRMVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEAHDKVDEAINSMRHLFASAIIVNLRVVELYKILTVCMILIAIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
SRS050669_LANL_scaffold_68470	SRS050669_LANL_scaffold_68470__gene_106854	F071328	MSRKHWTFTNIIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTALYLRYSSQLLLKKKRAIRRLGIEKENISAILRQGGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW
SRS050669_LANL_scaffold_68488	SRS050669_LANL_scaffold_68488__gene_106935	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCNNLQAALVRCSHSYEQVLLGRDTLNSILGGCVIGSKGWLKMADNTLIGQILKAIEIDVYDI