7000000731: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994

Overview

Basic Information

• IMG/M Taxon OID: 7000000731
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053325 | Ga0031239
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124671135
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2885894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	742
C2893355	Not Available	793
C2901718	Not Available	860
C2904828	Not Available	889
C2919020	Not Available	1054
C2921924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1099
C2952528	All Organisms → Viruses → Predicted Viral	2146
SRS014271_WUGC_scaffold_15102	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1040
SRS014271_WUGC_scaffold_17555	All Organisms → Viruses → Predicted Viral	2562
SRS014271_WUGC_scaffold_28266	Not Available	1470
SRS014271_WUGC_scaffold_30217	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	695
SRS014271_WUGC_scaffold_38209	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	723
SRS014271_WUGC_scaffold_42157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	553
SRS014271_WUGC_scaffold_44746	Not Available	1399
SRS014271_WUGC_scaffold_45032	Not Available	4693
SRS014271_WUGC_scaffold_8434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11502
SRS014271_WUGC_scaffold_8782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1099

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2885894	C2885894__gene_153776	F103436	MITTSKDGWCDRSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE
C2893355	C2893355__gene_157637	F089057	MVHPIKFGCTIYIVLEANMTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLGSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAISKDEVLVKKLMNESATTAFQYMSEEDIHNVVDDINSRSVLSRYLSRM
C2901718	C2901718__gene_161896	F072446	LLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER
C2904828	C2904828__gene_163426	F103432	MKLINSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTTAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLLGKIQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
C2919020	C2919020__gene_171050	F081455	MEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK
C2921924	C2921924__gene_172699	F099454	MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
C2952528	C2952528__gene_193163	F095629	MRELIICACLFGCFGVANAAAPVDQPKEVKVVHNDDNVALHKKIYKLEQRIERLEKLLAEKEGK
SRS014271_WUGC_scaffold_15102	SRS014271_WUGC_scaffold_15102__gene_16893	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRK
SRS014271_WUGC_scaffold_17555	SRS014271_WUGC_scaffold_17555__gene_19538	F095631	EAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS014271_WUGC_scaffold_28266	SRS014271_WUGC_scaffold_28266__gene_31867	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIEDTETKVRWSNVKPPQYGDPINITLKAEGETFTTVGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS014271_WUGC_scaffold_30217	SRS014271_WUGC_scaffold_30217__gene_34205	F080166	VNILANFENYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPGNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLIPFVLIDDHSGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMK
SRS014271_WUGC_scaffold_38209	SRS014271_WUGC_scaffold_38209__gene_45186	F099453	MLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRVYINSANLNDLGE
SRS014271_WUGC_scaffold_42157	SRS014271_WUGC_scaffold_42157__gene_52320	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNEGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDASTIDTFTRHDIPKVDKDTAYYKDIVIYLTRNEREQTTTLKLVAPPNRTQQ
SRS014271_WUGC_scaffold_44746	SRS014271_WUGC_scaffold_44746__gene_59457	F085820	MRSTFYLFAVLFLATTFFSCETDEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPPNPDHLKQRIVLRLADGTEIEKELSEKGTK
SRS014271_WUGC_scaffold_45032	SRS014271_WUGC_scaffold_45032__gene_60837	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNIFNLYKDIINLDDISLLAELRHTEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFNTLREDEDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
SRS014271_WUGC_scaffold_8434	SRS014271_WUGC_scaffold_8434__gene_9661	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTMKYE
SRS014271_WUGC_scaffold_8782	SRS014271_WUGC_scaffold_8782__gene_10049	F046433	LSQAQDASRDNLMVYVKADNYLGTETSDPPFMESRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGED