7000000727: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000727
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053321 | Ga0031240
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112258145
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F092229	Metagenome	107	N
F099452	Metagenome	103	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3698104	Not Available	706
C3698358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	707
C3709064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	786
C3719699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	888
C3738730	Not Available	1207
C3755218	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1959
C3757230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040	2151
C3758172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2261
C3765622	All Organisms → Viruses → Predicted Viral	4278
SRS014470_WUGC_scaffold_1500	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1021
SRS014470_WUGC_scaffold_15456	Not Available	881
SRS014470_WUGC_scaffold_47773	Not Available	6082

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3698104	C3698104__gene_153398	F085820	FYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSKKGKK
C3698358	C3698358__gene_153535	F080166	VEQIFELNYYLTFKLEVTFNTIHKKINNEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGTNRQNMLR
C3709064	C3709064__gene_159362	F103436	MMATSKYGCCDKSDAEILENLKDWVSKCDVSSKREALKKIDSAFALWGAGEYVSAVHLLDENEVFLEKSDWPYYALGIEILKARKHEFFNE
C3719699	C3719699__gene_165266	F080166	VEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTVIDEAIDICDPGNKTSPFKRMYSTTGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMK
C3738730	C3738730__gene_176926	F080164	MVGLALCAAPQVTLRERASAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLIVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDKSRQAVDEQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRSDLLLDAANARPEIFGELRPVIDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
C3755218	C3755218__gene_188945	F092229	DVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSPKVLDLAIEYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVESAKFTHELLMASRSENFNPEMVREIFVKYGLKPNASRNLYNRINDNLNLFYYIEDYLEEYKEEGKFIYGTREYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
C3757230	C3757230__gene_190656	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFIQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
C3758172	C3758172__gene_191433	F081455	VIDLDDLSPIYYSIVLFKAKEKHIMETMKRDLELEQMLENATNILYQMADLAICGKKPNTEEKDIPPAEEIGAEKVDIIDSAEEAIQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPEGDPNKRLRYELIRHQGREKD
C3765622	C3765622__gene_199763	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTPWYKDWFIDDKRNSDLIDLSKFNFRSLERFEKESYLKDVEHYDFKKVIEVDSYSLYDTLAEENGVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRINEDTRTRAR
SRS014470_WUGC_scaffold_1500	SRS014470_WUGC_scaffold_1500__gene_1279	F033081	MYPPDLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATGAAWTVGMTGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRAGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAA
SRS014470_WUGC_scaffold_15456	SRS014470_WUGC_scaffold_15456__gene_13684	F085820	MRSTFYLFAMLFVATTFFSCETGEPAPRATWGEIVNPIEAFMYPRDLKVFAGDNDGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSKKRTK
SRS014470_WUGC_scaffold_47773	SRS014470_WUGC_scaffold_47773__gene_52546	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPIFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR