7000000726: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000726
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053320 | Ga0027595
• Sample Name: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38525673
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F051213	Metagenome	144	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1115473	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1164
C1126995	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3234
C1127399	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3525
SRS014473_WUGC_scaffold_10626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	6850

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1115473	C1115473__gene_51494	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C1126995	C1126995__gene_59970	F042387	MKRIILFFMAGLFFVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGKELGKTNYQYSNGKLSSVIDEAVISDSGIQYKRVVTREYHYNGSEVSVNENVKYHSESYAYNLKDENSTHTYVLNGENIIKIHHDISKNVPNGHFYLNPNNMVVIDEEVIYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTIITMVYEYNK
C1127399	C1127399__gene_60465	F059076	MTNRILLLGLLLGGASINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNVGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTTTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE
SRS014473_WUGC_scaffold_10626	SRS014473_WUGC_scaffold_10626__gene_18358	F051213	MKASKFLWAVVMALTFVLTSCDPFSQNEPTIEGDHYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSIIDVEVQKNETGKDRSVFFATRNSYKQAYLPNMIVTQRAK
SRS014473_WUGC_scaffold_10626	SRS014473_WUGC_scaffold_10626__gene_18359	F051213	MKASKFLWAVVIALTFVLTSCDPFSKNEPIVEGDVDKYFDSNAQHKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVTQRAN