7000000720: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 765094712

Overview

Basic Information

• IMG/M Taxon OID: 7000000720
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053305 | Ga0031096
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 765094712
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138184723
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F047127	Metagenome	150	N
F061925	Metagenome	131	N
F080165	Metagenome	115	N
F089056	Metagenome	109	N
F095632	Metagenome	105	N
F101359	Metagenome	102	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3477590	Not Available	517
C3510223	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	615
SRS045197_WUGC_scaffold_41597	All Organisms → cellular organisms → Bacteria	43753
SRS045197_WUGC_scaffold_50212	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	593
SRS045197_WUGC_scaffold_58639	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1701
SRS045197_WUGC_scaffold_61897	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	800
SRS045197_WUGC_scaffold_65963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	744
SRS045197_WUGC_scaffold_67095	Not Available	515
SRS045197_WUGC_scaffold_75177	All Organisms → cellular organisms → Bacteria	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3477590	C3477590__gene_180695	F022002	HAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGYLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI
C3510223	C3510223__gene_194455	F089056	LLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSVLLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ
SRS045197_WUGC_scaffold_41597	SRS045197_WUGC_scaffold_41597__gene_48078	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSIKTPQTN
SRS045197_WUGC_scaffold_50212	SRS045197_WUGC_scaffold_50212__gene_58869	F047127	LSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDHMVGDHDIREILEKYNSK
SRS045197_WUGC_scaffold_58639	SRS045197_WUGC_scaffold_58639__gene_69828	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS045197_WUGC_scaffold_61897	SRS045197_WUGC_scaffold_61897__gene_74262	F101360	VSKENALRKAAIAAHITKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTVQEEAIRELISTGDISLIEIEGGDA
SRS045197_WUGC_scaffold_65963	SRS045197_WUGC_scaffold_65963__gene_80331	F080165	TKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS045197_WUGC_scaffold_67095	SRS045197_WUGC_scaffold_67095__gene_82134	F022002	ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHCFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS045197_WUGC_scaffold_75177	SRS045197_WUGC_scaffold_75177__gene_97937	F061925	MSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI