7000000716: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937

Overview

Basic Information

• IMG/M Taxon OID: 7000000716
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053301 | Ga0031344
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73971811
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F046433	Metagenome	151	N
F072446	Metagenome	121	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F103432	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1664849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1000
C1680596	Not Available	2912
SRS044662_LANL_scaffold_11586	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	27057
SRS044662_LANL_scaffold_3734	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	15246
SRS044662_LANL_scaffold_49165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1478
SRS044662_LANL_scaffold_49669	Not Available	146948
SRS044662_LANL_scaffold_49903	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	12738

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1664849	C1664849__gene_129864	F046433	MSELSTSPDALSELSPVAPPKLLSQAQDASRGNPMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMENCAKELIDELAFLGMSELHFAATALAKRLRHHLEVDNKPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYKGRLKVYGGRGEIGKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDGSISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIACCAIEGRILKGERID
C1680596	C1680596__gene_131382	F072446	MHEFNAQAKNKFNSPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFNGDTLAQIAWNFPYIVEEHYHSISGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYKSRRKYDSGRIVTLECEDTESLTARYVVQLGQIRKAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIGR
SRS044662_LANL_scaffold_11586	SRS044662_LANL_scaffold_11586__gene_25683	F103432	MKLINSLFSFSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVTMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFCVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVAEVPLY
SRS044662_LANL_scaffold_11586	SRS044662_LANL_scaffold_11586__gene_25684	F080164	MVGLTLSAAPQVTLRERASAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
SRS044662_LANL_scaffold_3734	SRS044662_LANL_scaffold_3734__gene_8154	F085820	MKSSFLTLFAMLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVYADDDDSRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS044662_LANL_scaffold_49165	SRS044662_LANL_scaffold_49165__gene_109267	F046433	MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS044662_LANL_scaffold_49669	SRS044662_LANL_scaffold_49669__gene_111327	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKNAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPAFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR
SRS044662_LANL_scaffold_49903	SRS044662_LANL_scaffold_49903__gene_112693	F042387	TIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK