7000000715: Human stool microbial communities from NIH, USA - visit 1, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 7000000715
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053300 | Ga0030481
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98941511
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F090515	Metagenome	108	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1569856	Not Available	527
SRS014683_WUGC_scaffold_11151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	673
SRS014683_WUGC_scaffold_22273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	648
SRS014683_WUGC_scaffold_43912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1569856	C1569856__gene_121300	F044554	VLAGRFIPVLCTSIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
SRS014683_WUGC_scaffold_11151	SRS014683_WUGC_scaffold_11151__gene_15973	F099269	VQVGELLLFDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
SRS014683_WUGC_scaffold_22273	SRS014683_WUGC_scaffold_22273__gene_31979	F047125	MDVALLLMVLGVMLSGFWAADALDRMRKEILRQEGKRRGWWS
SRS014683_WUGC_scaffold_43912	SRS014683_WUGC_scaffold_43912__gene_67181	F090515	RVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS