7000000709: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411

Overview

Basic Information

• IMG/M Taxon OID: 7000000709
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053294 | Ga0031061
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72755108
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F092231	Metagenome	107	Y
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2276249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5195
C2276329	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	5440
SRS019906_WUGC_scaffold_16920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1090
SRS019906_WUGC_scaffold_18046	Not Available	1812
SRS019906_WUGC_scaffold_22030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	14297
SRS019906_WUGC_scaffold_29333	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	837
SRS019906_WUGC_scaffold_30876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	808
SRS019906_WUGC_scaffold_3100	All Organisms → Viruses → Predicted Viral	3370
SRS019906_WUGC_scaffold_33133	All Organisms → cellular organisms → Bacteria	4694
SRS019906_WUGC_scaffold_35555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	9366
SRS019906_WUGC_scaffold_43118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	5048
SRS019906_WUGC_scaffold_46974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1663
SRS019906_WUGC_scaffold_47361	All Organisms → cellular organisms → Bacteria	2048
SRS019906_WUGC_scaffold_50430	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	9424
SRS019906_WUGC_scaffold_50961	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1508
SRS019906_WUGC_scaffold_51530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	515
SRS019906_WUGC_scaffold_51547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1282
SRS019906_WUGC_scaffold_52149	All Organisms → Viruses → Predicted Viral	1275
SRS019906_WUGC_scaffold_52461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	6532
SRS019906_WUGC_scaffold_53338	All Organisms → cellular organisms → Bacteria	3507
SRS019906_WUGC_scaffold_53493	All Organisms → cellular organisms → Bacteria	1233
SRS019906_WUGC_scaffold_8349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	663

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2276249	C2276249__gene_134592	F080165	MKSIKILLLLLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR
C2276329	C2276329__gene_134656	F063777	MKVLNIKISALPPENNSFWMKLLLYLCVPFLLIFGILFLIGWEIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDSQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISENVFY
SRS019906_WUGC_scaffold_16920	SRS019906_WUGC_scaffold_16920__gene_18413	F101358	MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALK
SRS019906_WUGC_scaffold_18046	SRS019906_WUGC_scaffold_18046__gene_19750	F077403	IILLLPSMYTVYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDLDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS019906_WUGC_scaffold_22030	SRS019906_WUGC_scaffold_22030__gene_24724	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
SRS019906_WUGC_scaffold_29333	SRS019906_WUGC_scaffold_29333__gene_34075	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTE
SRS019906_WUGC_scaffold_30876	SRS019906_WUGC_scaffold_30876__gene_36204	F101358	MTEKYSASLPPRQEHLLTQPITTDGTPQERATHPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDFTNAYLQKAYGVMIKDGRLQPAADTTHATTSSQEHQTEVLPAQGGDTHEHRSGDSARQLVGSVAAKASDTEVDNSLLVE
SRS019906_WUGC_scaffold_3100	SRS019906_WUGC_scaffold_3100__gene_3027	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLADDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS019906_WUGC_scaffold_3100	SRS019906_WUGC_scaffold_3100__gene_3029	F027205	VASRLIVTADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS019906_WUGC_scaffold_3100	SRS019906_WUGC_scaffold_3100__gene_3030	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS019906_WUGC_scaffold_33133	SRS019906_WUGC_scaffold_33133__gene_39247	F097526	MTTNDTKAITIYTQDDYRRLCERLNDDTVAALLHAHIRAFTADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTKQCEENGSRDTAIPLPRDDYGFAAALRDIPLNEAQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHTAAASGPAGTEAMQAAVPVFRQQDGRQSP
SRS019906_WUGC_scaffold_35555	SRS019906_WUGC_scaffold_35555__gene_42502	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSYFRLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRIIFG
SRS019906_WUGC_scaffold_43118	SRS019906_WUGC_scaffold_43118__gene_53234	F092231	MIIFPPQEFITWTGTLTQFPWPIQVDDFPPYAERLGWTPTPRPTWFNVLPDNDDEITMISSDREGNVRNLFLYTASNEAEDDEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFSQVTGGFTAVLFNFFTPEGRRQFL
SRS019906_WUGC_scaffold_46974	SRS019906_WUGC_scaffold_46974__gene_59124	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGNGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
SRS019906_WUGC_scaffold_47361	SRS019906_WUGC_scaffold_47361__gene_59794	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS019906_WUGC_scaffold_50430	SRS019906_WUGC_scaffold_50430__gene_65271	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWENPKSIDDIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS019906_WUGC_scaffold_50961	SRS019906_WUGC_scaffold_50961__gene_66325	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNKFPIKTKLNIDNQNVTTMVYEYNK
SRS019906_WUGC_scaffold_51530	SRS019906_WUGC_scaffold_51530__gene_67480	F067847	GIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAINNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS019906_WUGC_scaffold_51547	SRS019906_WUGC_scaffold_51547__gene_67511	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDY
SRS019906_WUGC_scaffold_52149	SRS019906_WUGC_scaffold_52149__gene_68809	F077403	FEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYKERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPNHYEGYQLYQGLVRGDSIWIEM
SRS019906_WUGC_scaffold_52461	SRS019906_WUGC_scaffold_52461__gene_69660	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKRE
SRS019906_WUGC_scaffold_53338	SRS019906_WUGC_scaffold_53338__gene_72051	F061927	MKKSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGEGL
SRS019906_WUGC_scaffold_53493	SRS019906_WUGC_scaffold_53493__gene_72595	F054111	MNKSLENITHEEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMKKTVKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI
SRS019906_WUGC_scaffold_8349	SRS019906_WUGC_scaffold_8349__gene_8711	F092231	MIIFAPQEFITWSNTLIQFPWPIQVDDFASYAERLGWTPTPRPTWFNVNANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGD