7000000707: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000707
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053292 | Ga0031281
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72662484
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F061925	Metagenome	131	N
F081510	Metagenome	114	N
F095633	Metagenome	105	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2688968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	602
C2689514	All Organisms → cellular organisms → Bacteria	606
C2716257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	995
C2724155	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1283
SRS019045_WUGC_scaffold_58425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	897

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2688968	C2688968__gene_107896	F095633	MGNYEKSTEAWRREGLTEGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVN
C2689514	C2689514__gene_108084	F061925	MSWEYSINLDSEEAVNSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDT
C2716257	C2716257__gene_117455	F105380	GENTMSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRRKDEKFICLTNIWPDGSSHEESYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKRCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK
C2724155	C2724155__gene_120329	F081510	KKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS019045_WUGC_scaffold_58425	SRS019045_WUGC_scaffold_58425__gene_67172	F046433	VAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKIRCKTTEYEAINDFVQFIEMIKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRCHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFSGDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERIAGFEVDNDPEDHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGED