7000000706: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771

Overview

Basic Information

• IMG/M Taxon OID: 7000000706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053291 | Ga0031083
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70706240
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctxZP4	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → candidate division TM7 genomosp. GTL1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043990	Metagenome	155	N
F049707	Metagenome	146	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1975018	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctxZP4	520
C1993065	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	630
C2006266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	757
C2011215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	826
SRS024021_Baylor_scaffold_14816	All Organisms → cellular organisms → Bacteria	2909
SRS024021_Baylor_scaffold_14937	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2433
SRS024021_Baylor_scaffold_15292	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3559
SRS024021_Baylor_scaffold_1920	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1577
SRS024021_Baylor_scaffold_24900	All Organisms → cellular organisms → Bacteria	905
SRS024021_Baylor_scaffold_30993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1856
SRS024021_Baylor_scaffold_32252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2492
SRS024021_Baylor_scaffold_34025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → candidate division TM7 genomosp. GTL1	5595
SRS024021_Baylor_scaffold_8700	All Organisms → cellular organisms → Bacteria	4609

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1975018	C1975018__gene_93299	F049707	DPYILIWEYGNDIRRAEFSERWATFGDEGWTIWYFRLVDGGVMTFSSREWEQRDDVNHLTTIWMKPSLYDIERKTS
C1993065	C1993065__gene_100253	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIY
C2006266	C2006266__gene_105490	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
C2011215	C2011215__gene_107437	F063778	MPETISEEAKQKLLQQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQELTTAREYLKSCADQIEYAISSIEAIPLDPPPDD
SRS024021_Baylor_scaffold_14816	SRS024021_Baylor_scaffold_14816__gene_20984	F090516	MKSNLSVELFLAFERYFIENDEEVSLDKISSGFTDVVLGIEFLPQNMIEDIDKKKKLLKKYGFSSSTALAEDFRKRVLNIDEPIPEDFEKDGVGYVYTFISGYDTFYNRMYVFGIHCFGDCFEVTYFDLDNDAGAGDYYKGLEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLSHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS024021_Baylor_scaffold_14937	SRS024021_Baylor_scaffold_14937__gene_21157	F081454	MKTFKFVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKARSVITQQKIK
SRS024021_Baylor_scaffold_15292	SRS024021_Baylor_scaffold_15292__gene_21703	F097490	VFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS024021_Baylor_scaffold_1920	SRS024021_Baylor_scaffold_1920__gene_2592	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISMETMVSEENLDIERSDLEDLTRNLKDLSEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS024021_Baylor_scaffold_24900	SRS024021_Baylor_scaffold_24900__gene_36007	F061927	SLNLFLNYIIMKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPRKDLDERIDKAISSCVEKKP
SRS024021_Baylor_scaffold_30993	SRS024021_Baylor_scaffold_30993__gene_45422	F101359	MKKFLSKRSILVGALALALGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK
SRS024021_Baylor_scaffold_32252	SRS024021_Baylor_scaffold_32252__gene_47927	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS024021_Baylor_scaffold_34025	SRS024021_Baylor_scaffold_34025__gene_51539	F066860	MTTKKQRLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS024021_Baylor_scaffold_8700	SRS024021_Baylor_scaffold_8700__gene_12480	F064818	MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFLIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK