7000000687: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490

Overview

Basic Information

• IMG/M Taxon OID: 7000000687
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053264 | Ga0031292
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86272605
• Sequencing Scaffolds: 10
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2046428	All Organisms → Viruses → Predicted Viral	1120
C2054121	Not Available	1492
SRS053854_LANL_scaffold_19976	All Organisms → cellular organisms → Bacteria	42029
SRS053854_LANL_scaffold_22380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	9781
SRS053854_LANL_scaffold_26921	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	231939
SRS053854_LANL_scaffold_31137	All Organisms → cellular organisms → Bacteria	52043
SRS053854_LANL_scaffold_44472	All Organisms → cellular organisms → Bacteria	20518
SRS053854_LANL_scaffold_46659	All Organisms → cellular organisms → Bacteria	31392
SRS053854_LANL_scaffold_53534	Not Available	3272
SRS053854_LANL_scaffold_54731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7640

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2046428	C2046428__gene_130511	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
C2054121	C2054121__gene_133620	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKRKK
SRS053854_LANL_scaffold_19976	SRS053854_LANL_scaffold_19976__gene_25832	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVSPELGKAAIDIENTSKMDSADNGAVDFCNQALGGYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
SRS053854_LANL_scaffold_22380	SRS053854_LANL_scaffold_22380__gene_29249	F067846	MESLQAQWERKTFDDYDRRCCAEDAYNEAVEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAVALGADYEEMRIKILTAMAEDRLEQLEEDYRKGFILND
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35680	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35708	F095629	MMRELIICVCLLGCFGVVNANNVEQPKEVKIVHNDDSIILHKKIYQLEKRIERLEELLKKEGK
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35770	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLTDLRKTPWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDAEHYDFEGVIEVDSYSLYDTLAEENGLNLFCFAAENILLNHGFFNNTDYQLYDVPEEYIDDQEVCMYMCLLNKDNIDFIDKNTYEDSVLYDIVRDRIFNAIYWSIRDSIEEDTRTRAR
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35808	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVVGQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRSVLSRYLNKM
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35815	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILLNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDVLNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35843	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGISNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYNPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35870	F081455	MEPLGKNSIKLMEKVLDNIILKSKKDIPPAEEIGAETVDIIDSAEEAIQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGKTKYYADIYPDLNKIDLDHHLISSAKK
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35871	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFRRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLR
SRS053854_LANL_scaffold_26921	SRS053854_LANL_scaffold_26921__gene_35873	F099453	MLRRKDMNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNMQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
SRS053854_LANL_scaffold_31137	SRS053854_LANL_scaffold_31137__gene_41906	F046433	MIELPTNPDALSELSPVVPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEIDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISGFEVDNDPESHEASVLVMAASGDYLDNGISAYSRYGGTIYPVEACYVLKNSSDAGGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGERIDDLSLPALANIVRPYRNGKNFDGLSRFRQLLEKE
SRS053854_LANL_scaffold_44472	SRS053854_LANL_scaffold_44472__gene_61746	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKLKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFSGAYWVNFISLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYNRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS053854_LANL_scaffold_46659	SRS053854_LANL_scaffold_46659__gene_65319	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNILLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAIVLAIDITKLL
SRS053854_LANL_scaffold_53534	SRS053854_LANL_scaffold_53534__gene_80358	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK
SRS053854_LANL_scaffold_54731	SRS053854_LANL_scaffold_54731__gene_85764	F080164	MRPTSFVLSLLLGVIGLAPCAARQVTLRERALAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS
SRS053854_LANL_scaffold_54731	SRS053854_LANL_scaffold_54731__gene_85765	F103432	MKLIHSLFSLPLLFVLGGLFCTTACQDDVEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDGKTIFRRHTLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVAGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR