7000000682: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695

Overview

Basic Information

• IMG/M Taxon OID: 7000000682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053259 | Ga0027974
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20329097
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F043990	Metagenome	155	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1044769	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	542
C1051938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	712
C1054010	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	800
C1061832	All Organisms → cellular organisms → Bacteria	2100
SRS019587_WUGC_scaffold_5608	All Organisms → Viruses → Predicted Viral	4800

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1044769	C1044769__gene_30830	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFMKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIY
C1051938	C1051938__gene_34115	F063777	LKVLNIKISALPPENNSFWMKLLFYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILENNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTI
C1054010	C1054010__gene_35060	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSTVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C1061832	C1061832__gene_38118	F061925	QTNIRNNSMSWEYSINLDSEESVSSVVADLKICKLFSSSTTDYIDWKNSEPIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHITDCDTDEEVTLEHIFRSVI
SRS019587_WUGC_scaffold_5608	SRS019587_WUGC_scaffold_5608__gene_6395	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPSPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK