7000000678: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792

Overview

Basic Information

• IMG/M Taxon OID: 7000000678
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053255 | Ga0027966
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9980129
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F053092	Metagenome	141	N
F074985	Metagenome	119	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C703124	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7410
C703142	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11477
SRS018661_WUGC_scaffold_2471	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1268

Sequences

Scaffold ID	Protein ID	Family	Sequence
C703124	C703124__gene_22936	F101360	VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRELISTGDISILEIEGGDA
C703142	C703142__gene_23036	F027205	VASRLIVSADDILKAVKESEEFERKALGEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
C703142	C703142__gene_23038	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS018661_WUGC_scaffold_2471	SRS018661_WUGC_scaffold_2471__gene_1874	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTVDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIARSDLTDPVAKDTLSEARLLDIFVCIVSYKLRFFRHK