7000000674: Human supragingival plaque microbial communities from the National Institute of Health, USA - subject 159490532, visit 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000674
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053250 | Ga0031093
• Sample Name: Human supragingival plaque microbial communities from the National Institute of Health, USA - subject 159490532, visit 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63046801
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F057446	Metagenome	136	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2093788	All Organisms → cellular organisms → Bacteria	3078
C2095162	All Organisms → Viruses → Predicted Viral	4492
C2095226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4605
C2095969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9367
SRS054430_LANL_scaffold_19104	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3365
SRS054430_LANL_scaffold_215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	17891

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2093788	C2093788__gene_120030	F090516	MKSNLSTELFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYKEYELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
C2095162	C2095162__gene_121730	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVISNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWI
C2095162	C2095162__gene_121734	F027205	MRAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
C2095162	C2095162__gene_121735	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWFTFRLSDDLKSKFTRHTMTNEKGHQYYDWVLENAELAADTIRYF
C2095162	C2095162__gene_121736	F074985	MMKLTDGGWYKTPRIIKGKDFLAYIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRIDLEQFEEIWISDTFRHLKPVIVLHQEKFWHVMGLELAGSEEADWFIYLKRQDSDFMTRLSMPMTQKFIYNPLSNSWSLDAPTEETKDLEKIKHTLKSEDVSEVIVSGVPMRLIRVQEISKGVLFFVFLDTAEKRRYYYARRTTKLRIVTNPDTLRNEYLLDHVKAMHID
C2095226	C2095226__gene_121842	F080165	MKNKKFLLTILLSLTACNNKTKTISTLDLEKVVINYKELPASVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C2095969	C2095969__gene_123303	F018385	MMAEYVNQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTSYMFTHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS054430_LANL_scaffold_19104	SRS054430_LANL_scaffold_19104__gene_20295	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYEDKKRKIDGFSQEEAEQIIKFLMNNR
SRS054430_LANL_scaffold_215	SRS054430_LANL_scaffold_215__gene_164	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQDFTDSYKETVK