7000000671: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 638754422

Overview

Basic Information

• IMG/M Taxon OID: 7000000671
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053247 | Ga0031302
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 638754422
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134783148
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F072445	Metagenome / Metatranscriptome	121	Y
F072446	Metagenome	121	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F089057	Metagenome	109	N
F095629	Metagenome	105	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4584226	Not Available	531
C4584290	Not Available	531
C4594818	Not Available	561
C4663401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	963
C4688339	Not Available	1459
C4689813	Not Available	1516
SRS022143_LANL_scaffold_17204	Not Available	756
SRS022143_LANL_scaffold_2853	All Organisms → cellular organisms → Bacteria	2252
SRS022143_LANL_scaffold_38401	Not Available	1567
SRS022143_LANL_scaffold_39473	Not Available	3166
SRS022143_LANL_scaffold_44835	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	2502
SRS022143_LANL_scaffold_4513	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	609
SRS022143_LANL_scaffold_5510	All Organisms → Viruses → Predicted Viral	1738
SRS022143_LANL_scaffold_84155	Not Available	1387

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4584226	C4584226__gene_182792	F054110	QPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C4584290	C4584290__gene_182810	F053092	FGILIAKELGIATHRIKADKHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
C4594818	C4594818__gene_186480	F072445	KFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNSVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTLSAKFEHYSLEFKNL
C4663401	C4663401__gene_212084	F081510	RKIMKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
C4688339	C4688339__gene_222839	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPMQDHLENNQIGYDSNNSKFYIGLNNQNVLFGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVN
C4689813	C4689813__gene_223553	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVN
SRS022143_LANL_scaffold_17204	SRS022143_LANL_scaffold_17204__gene_17939	F103432	MKLIHSLFSLPLLLVLGGFLCLTACQDDAEPTQRTGLISTDSLFHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSL
SRS022143_LANL_scaffold_2853	SRS022143_LANL_scaffold_2853__gene_2992	F105376	MNKNKKEGNMEPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWKLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK
SRS022143_LANL_scaffold_38401	SRS022143_LANL_scaffold_38401__gene_41371	F081455	METTNLQEINERAAKSLEDLMNFVLYGKKPKTEEKDIPPVEEIGSETVDIIDAAEEAIQQPLQNKDTSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVIDGKTKYYADIYPDLNKIDLDHHLISSA
SRS022143_LANL_scaffold_39473	SRS022143_LANL_scaffold_39473__gene_42719	F103430	MEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGCWRGEVEETAVLYLSDERQKVMNTLNKLKEVLGQEAIAYQIENDLQLI
SRS022143_LANL_scaffold_44835	SRS022143_LANL_scaffold_44835__gene_49108	F095629	MRELIICVCLLGCFSVSNANNVEQPKDVKIVHNDDNVILHKKIYQLEKRIERLEELLKKEDK
SRS022143_LANL_scaffold_4513	SRS022143_LANL_scaffold_4513__gene_4730	F080166	MEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETTGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMM
SRS022143_LANL_scaffold_5510	SRS022143_LANL_scaffold_5510__gene_5786	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVISQIRHTASSKEGKALGLFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEE
SRS022143_LANL_scaffold_84155	SRS022143_LANL_scaffold_84155__gene_98628	F072446	SIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL