7000000667: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422

Overview

Basic Information

• IMG/M Taxon OID: 7000000667
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053243 | Ga0031074
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81676028
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F081456	Metagenome	114	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2798252	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	698
C2806471	Not Available	766
SRS022149_LANL_scaffold_15506	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5173
SRS022149_LANL_scaffold_16773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	530
SRS022149_LANL_scaffold_6725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	930
SRS022149_LANL_scaffold_7464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1466
SRS022149_LANL_scaffold_8975	Not Available	969
SRS022149_LANL_scaffold_9283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	862

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2798252	C2798252__gene_120849	F051214	MPGKIVAHNTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQ
C2806471	C2806471__gene_125796	F022002	RLTKETTMNMMNIYSPSSRSMSRRLALTLGLLLALLLSLPSYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI
SRS022149_LANL_scaffold_15506	SRS022149_LANL_scaffold_15506__gene_13259	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNAKGHQSYDWVLKNVEWAADTIRYF
SRS022149_LANL_scaffold_15506	SRS022149_LANL_scaffold_15506__gene_13260	F027205	VASRLIVSADDILKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS022149_LANL_scaffold_16773	SRS022149_LANL_scaffold_16773__gene_14890	F101359	GALALVLGFIVSSCSRDKDDDAVYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGTRVQNWSTNFTSYTGQGITDSYKETVK
SRS022149_LANL_scaffold_6725	SRS022149_LANL_scaffold_6725__gene_4139	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIIFGAIGFATWLVWLTPISFMTKLVMTAIGFLLCAITVILYTISAE
SRS022149_LANL_scaffold_7464	SRS022149_LANL_scaffold_7464__gene_4771	F018385	MAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVEHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSRDGLNELVFMPRMNSRLPSTLWNTKEVK
SRS022149_LANL_scaffold_8975	SRS022149_LANL_scaffold_8975__gene_6094	F022002	RLTKETTINMVNIYSPSSHPMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDKELDRARSAEKESEN
SRS022149_LANL_scaffold_9283	SRS022149_LANL_scaffold_9283__gene_6398	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELKNL