7000000663: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765074482

Overview

Basic Information

• IMG/M Taxon OID: 7000000663
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053239 | Ga0031260
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765074482
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98937371
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095633	Metagenome	105	N
F103433	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3963420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	709
C4005194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1428
C4018733	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2657
SRS016319_WUGC_scaffold_41013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1457
SRS016319_WUGC_scaffold_52913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	735

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3963420	C3963420__gene_135485	F095633	MKNYENFTEVGHREGLTEGELRTMGMLAMEATEELKKTTIRKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEEHSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLKKYPDGELYPIREAYVISVIDVNGSQEVDFKII
C4005194	C4005194__gene_160234	F105380	MPILELDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLSELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWHDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFL
C4018733	C4018733__gene_171757	F094007	VFCGVDYLWILWYNSYYMKLKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGHGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS016319_WUGC_scaffold_41013	SRS016319_WUGC_scaffold_41013__gene_37006	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVITGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVSVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILF
SRS016319_WUGC_scaffold_52913	SRS016319_WUGC_scaffold_52913__gene_54011	F092230	LFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV