7000000661: Human stool microbial communities from NIH, USA - visit 2, subject 159490532

Overview

Basic Information

• IMG/M Taxon OID: 7000000661
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053237 | Ga0030567
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159490532
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106091209
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F077313	Metagenome	117	N
F078006	Metagenome	117	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F097172	Metagenome / Metatranscriptome	104	Y
F097493	Metagenome	104	Y
F102167	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1815430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	519
C1851152	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	777
C1874286	Not Available	1224
C1876403	Not Available	1296
C1880661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1472
C1885309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1728
C1889797	All Organisms → Viruses → Predicted Viral	2079
C1895673	Not Available	2830
C1896565	Not Available	2994
C1901632	All Organisms → Viruses → Predicted Viral	4410
C1905460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7168
SRS052027_LANL_scaffold_3389	All Organisms → cellular organisms → Bacteria	20647

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1815430	C1815430__gene_101643	F097493	MKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLQIAELKAGVSNE
C1851152	C1851152__gene_116837	F078006	HNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
C1874286	C1874286__gene_127495	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVIKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWP
C1876403	C1876403__gene_128555	F058555	MGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCFRHVIENCHEDIDYQLKTLKAYAEGEIRIALPDIMIYSYKAKKNEDTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVKILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
C1880661	C1880661__gene_130730	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLPEVSVELKAGGTRPFVHVVYLLPDP
C1885309	C1885309__gene_133309	F083451	MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNFKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD
C1889797	C1889797__gene_136057	F057001	MTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKDKEVVIQLCKDILPRINNTFCAYKEIEREYLDKLDQDKNVKMTVDKIESIAILGTTHKRFGYNEPVEYDGGVYYDVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNER
C1895673	C1895673__gene_140023	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQTLLVYWESLNKGNHIDDPESTSFGLPDDYLWFSNIKGSFSYKGCKVGDFVMWEAKNENVHELLGDDSNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLTGYINAAGMQSTDIDPELPDPLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK
C1895673	C1895673__gene_140024	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDNKSKTKKVKDIKKKDGVEEGDKVKEE
C1896565	C1896565__gene_140685	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFMIQLATSFGMDLDLDTTYASTAKGIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
C1901632	C1901632__gene_145141	F077313	MGKYVIKRKIPKYQDAGEVDPVMPGNIVGLQGLGVEPLVSSTRIGFDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENKFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTSAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNINARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
C1905460	C1905460__gene_149709	F102167	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK
C1905460	C1905460__gene_149713	F083452	MSGRIKIKSKDKDKRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVGRGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
SRS052027_LANL_scaffold_3389	SRS052027_LANL_scaffold_3389__gene_7011	F097172	MSIIQIYLQNPKEGFIMKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK