7000000654: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764305738

Overview

Basic Information

• IMG/M Taxon OID: 7000000654
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053230 | Ga0031028
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764305738
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75573588
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1833295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	718
SRS015899_WUGC_scaffold_11848	Not Available	508
SRS015899_WUGC_scaffold_14568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1347
SRS015899_WUGC_scaffold_32607	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	762
SRS015899_WUGC_scaffold_7410	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1585

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1833295	C1833295__gene_110845	F047127	MKKTFAFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS015899_WUGC_scaffold_11848	SRS015899_WUGC_scaffold_11848__gene_16038	F097526	AALLHAHIDAFAADGNRQLLNRLTEGVRIAGEMEKAGRNGHPDSEEQTRRAYWDCHFAALQQHARMAGNQITNADNAAVSRLTAQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVV
SRS015899_WUGC_scaffold_14568	SRS015899_WUGC_scaffold_14568__gene_19984	F051212	FMKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK
SRS015899_WUGC_scaffold_32607	SRS015899_WUGC_scaffold_32607__gene_47157	F059076	TRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLLVDAVGDVYQGLPINNMSILTLTISNVNGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLQQHGANWAISADYPNIGVYELSSGSTALGQPVNGTWVITLLVGKRDAVNFTELNFNQSGGSTGTGRNDNTYKAGLESFLQKLE
SRS015899_WUGC_scaffold_7410	SRS015899_WUGC_scaffold_7410__gene_10125	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTELNFNQRGKDDGQGIKDNTYKAGIENFLQKLD