7000000652: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Basic Information

• IMG/M Taxon OID: 7000000652
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053228 | Ga0031068
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160400887
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132521956
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F049707	Metagenome	146	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3377233	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	517
C3390459	Not Available	548
C3400445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	576
C3466956	Not Available	979
C3477657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1151
C3486691	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1397
C3495819	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1898
C3496943	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1990
C3497664	Not Available	2061
C3504302	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3272
C3505022	All Organisms → cellular organisms → Bacteria	3542
C3509556	All Organisms → cellular organisms → Bacteria	11107
SRS020226_Baylor_scaffold_26726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1980
SRS020226_Baylor_scaffold_32389	All Organisms → Viruses → Predicted Viral	1797
SRS020226_Baylor_scaffold_39870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1631
SRS020226_Baylor_scaffold_40826	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	52082
SRS020226_Baylor_scaffold_42953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	613
SRS020226_Baylor_scaffold_60825	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	4875
SRS020226_Baylor_scaffold_64635	All Organisms → cellular organisms → Bacteria	43558
SRS020226_Baylor_scaffold_67868	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11663
SRS020226_Baylor_scaffold_68582	Not Available	8714

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3377233	C3377233__gene_179319	F043990	MIKKLGIIFTVGVIILGIVVYVDHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNRIPKQFLNITNGYYKYVVDENDDRDFGILIV
C3390459	C3390459__gene_184944	F054109	MVGRPKSKKGAKVHTAFKIYPADKERAQAMAEKLDMSLSSYINKAVLEKVARDEKSEN
C3400445	C3400445__gene_189108	F081454	KMTMNSDIESAIATQKKQGNNVPFILEYTKYFYEAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNINEDTKKILIESIKQFAEMNTQFPKEGLKIGDSFHMVIPYKQSIPNAGDITMKMKGKYTLLKVEKEEAYFDMLIDFVMEGRENIKKMDLSGSGEGKGFLLLDMKNNYFTAQNLDMTINLK
C3466956	C3466956__gene_218755	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGRVRINHAYIAYTDEELERARSAEKESEN
C3477657	C3477657__gene_224099	F042387	MKRIILFFMTGLFLISCSRENDKMTNETLANSAKMQLPTKVIIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNSSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK
C3486691	C3486691__gene_228572	F089056	MVLEKNHIFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C3495819	C3495819__gene_233645	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGMIILTCAGMITYVYTYLKKHQKLNLKIVIIALAAALLFEYAYPWRLIFG
C3496943	C3496943__gene_234291	F063777	MKILNIKISALPPENNSFWMKLLFYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKTTVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE
C3497664	C3497664__gene_234759	F077403	MSAIYAEERISVHFEVRWHRERNPIDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGSALPDRYEGYQLYQGLVRGDSIWIEM
C3504302	C3504302__gene_239070	F041827	MKHFLSALALGCLLLSCNRDNETNENPAPQNEKLVLLDKLSEGSTVIFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLAFSHAISTEFYPGTGLTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDKQGNVVQTIEYYNTKNALRNIKGFPALVVEFYIRPITYELPYYNHGIERIEDLRFIDNVKTRDFHDDDYMLYKYDDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE
C3504302	C3504302__gene_239071	F041827	MKHFLSVLALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYVSNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVMKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEIEKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK
C3505022	C3505022__gene_239616	F064818	MNKDEFLKELIAFIADNSSELYPKIFNNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK
C3509556	C3509556__gene_243918	F097526	MRSTSTLSSKTTAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMSLLTIAEIADIAPELAAIYLNGTGGEHMGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRYITTALGSEVQGKPQ
SRS020226_Baylor_scaffold_26726	SRS020226_Baylor_scaffold_26726__gene_33546	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKHL
SRS020226_Baylor_scaffold_32389	SRS020226_Baylor_scaffold_32389__gene_40605	F018385	WSLSRISGAEIMMAEHVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRISKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS020226_Baylor_scaffold_39870	SRS020226_Baylor_scaffold_39870__gene_50023	F066860	KQQTIDTWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICVAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS020226_Baylor_scaffold_40826	SRS020226_Baylor_scaffold_40826__gene_51260	F043235	MDEVVPSDEGHLLIDLCDDDPRRLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS020226_Baylor_scaffold_42953	SRS020226_Baylor_scaffold_42953__gene_54081	F064819	FSMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKDLCEYKIRKFFFQNIDETIEMVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK
SRS020226_Baylor_scaffold_60825	SRS020226_Baylor_scaffold_60825__gene_79223	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLHGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS020226_Baylor_scaffold_64635	SRS020226_Baylor_scaffold_64635__gene_86228	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKEN
SRS020226_Baylor_scaffold_67868	SRS020226_Baylor_scaffold_67868__gene_93890	F040149	VADEGAEELRWEALIKEQGIPVLFVEVEAWYDGRVSSSEILHSVGIALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHALTAVRERETVVMQLLNIHRMF
SRS020226_Baylor_scaffold_67868	SRS020226_Baylor_scaffold_67868__gene_93891	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGEAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS020226_Baylor_scaffold_68582	SRS020226_Baylor_scaffold_68582__gene_97209	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARTIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS020226_Baylor_scaffold_68582	SRS020226_Baylor_scaffold_68582__gene_97210	F022002	MTNIYSFLSPSSMGRKIVLAFGILLALLLSLPAHAQDGQSEVPINRTISGFTLGVTTPAQARAIIQRQGGKIISTEGTQAGSDDGIYFVTGLKYARRSTLMAGLFFYKGHLRRILFAFDDLDTLELIESELENKYGTMAEDKVTSKMKGKTIANAFTALEVVRSFEYEGHVGFKLAHIAYTDLELERARSAEEENEI