7000000649: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000649
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053225 | Ga0031094
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 194271525
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1
Not Available	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F059076	Metagenome	134	N
F066860	Metagenome	126	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F095632	Metagenome	105	N
F099454	Metagenome	103	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C4380404	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	624
C4430936	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	835
C4495188	All Organisms → cellular organisms → Bacteria	2014
SRS047634_LANL_scaffold_10282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1978
SRS047634_LANL_scaffold_103248	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	578
SRS047634_LANL_scaffold_103605	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1020
SRS047634_LANL_scaffold_105463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2883
SRS047634_LANL_scaffold_115408	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2558
SRS047634_LANL_scaffold_13218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	969
SRS047634_LANL_scaffold_133037	Not Available	7277
SRS047634_LANL_scaffold_136737	All Organisms → Viruses → Predicted Viral	2978
SRS047634_LANL_scaffold_137036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3283
SRS047634_LANL_scaffold_140001	All Organisms → cellular organisms → Bacteria	3509
SRS047634_LANL_scaffold_140685	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19689
SRS047634_LANL_scaffold_14162	All Organisms → Viruses → Predicted Viral	2833
SRS047634_LANL_scaffold_31245	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1022
SRS047634_LANL_scaffold_35977	All Organisms → cellular organisms → Bacteria	1282
SRS047634_LANL_scaffold_37352	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	776

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4380404	C4380404__gene_298049	F051213	MKASKLLWAVVMALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
C4430936	C4430936__gene_314099	F059076	LKFTLMTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE
C4495188	C4495188__gene_335337	F076191	MKIIAESPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDDYYDNPTTYIRSAHHNQELKDVIHLLILAGGNEIPSNHYGILRDA
SRS047634_LANL_scaffold_10282	SRS047634_LANL_scaffold_10282__gene_10671	F066860	MTTKKQKLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVTI
SRS047634_LANL_scaffold_103248	SRS047634_LANL_scaffold_103248__gene_128289	F071327	FNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
SRS047634_LANL_scaffold_103605	SRS047634_LANL_scaffold_103605__gene_128818	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPIHNMSILTLTISNVEGDWIAKFDTGIDHNKYAVAIMSAFFKLPAKSGNDLVMLTGNSGVPNATNGSSTSARIAPPTVILKKDGNNWVIEADYDNMSPEKFTKDKENRGISGKGKNVDGTWVISLLVGRRDAINFTELEFSQGGNNSGTGITDNTYKTGLENFLKKLE
SRS047634_LANL_scaffold_105463	SRS047634_LANL_scaffold_105463__gene_131604	F071327	MEDLFNSVYSTHKGISFSTVIVFGAFIFLLLQVHLSYKGTISEVLRKTGFFSMILLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILTCAGMITYVYIYLKKHPKLNLKIVIIALVAALLFEYAYPWRLIFG
SRS047634_LANL_scaffold_115408	SRS047634_LANL_scaffold_115408__gene_146924	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPNHYEGYQLYQGLVRGDSIWIEM
SRS047634_LANL_scaffold_13218	SRS047634_LANL_scaffold_13218__gene_13947	F099454	MAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS047634_LANL_scaffold_133037	SRS047634_LANL_scaffold_133037__gene_178694	F022002	VTTPAQARAIIQRQGGKIIRAEGTQAGSDEQAYVVEGLKYARRSTFLAGLYFYKGHLRRIVFIFNDLDALEQIESELEDKYGTMIESEGTSKRKSKGIVDAFTTLEVVRRFEYEGHVGFDYAYIAYADGELDRARSAEKESEI
SRS047634_LANL_scaffold_136737	SRS047634_LANL_scaffold_136737__gene_187304	F070224	MKRLLFLLLTLLHCTAWGQVYNTPDSIYVVSSGVYIPPVSGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSGQNNLIVRKVGGSLIIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFARMPTALREIKKYKLPRTRRTLGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYHHPEAYHPGICIIH
SRS047634_LANL_scaffold_136737	SRS047634_LANL_scaffold_136737__gene_187305	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVVSSGVYIPPVSGEPIYLLASPLKSGHTPGSKIRTRDWVKADYSNQNNLIVRKVGGSLIIENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYIDYNHPEAYTMH
SRS047634_LANL_scaffold_137036	SRS047634_LANL_scaffold_137036__gene_188074	F077403	MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASVRLRDEGTS
SRS047634_LANL_scaffold_140001	SRS047634_LANL_scaffold_140001__gene_197028	F101358	VQRALASERFFFSIVSWYYKKMTEKYSASLPPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGKLQPVADAAHTASQSSATEQETEVLPTQGGDTHKHLDEDDARQLVGSVAAKTSDGEVDNGLLVRRALGRVR
SRS047634_LANL_scaffold_140685	SRS047634_LANL_scaffold_140685__gene_199714	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSLQTPSTN
SRS047634_LANL_scaffold_140685	SRS047634_LANL_scaffold_140685__gene_199734	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFAERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIHFQPKINSEGN
SRS047634_LANL_scaffold_14162	SRS047634_LANL_scaffold_14162__gene_14982	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVNWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQDRSVLFATSNNHTQTHRPDIVVTQKAK
SRS047634_LANL_scaffold_31245	SRS047634_LANL_scaffold_31245__gene_34231	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYKEDSLRYTFTRYILR
SRS047634_LANL_scaffold_35977	SRS047634_LANL_scaffold_35977__gene_39579	F051211	IRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVIIRVFIDGSTYDIDPSIDIRLAPTLTIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS047634_LANL_scaffold_37352	SRS047634_LANL_scaffold_37352__gene_41328	F041827	LLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNRNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRSYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMVADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGV