7000000644: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976

Overview

Basic Information

• IMG/M Taxon OID: 7000000644
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053220 | Ga0028031
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23033807
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051213	Metagenome	144	N
F077404	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS063272_LANL_scaffold_10461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4846
SRS063272_LANL_scaffold_8240	All Organisms → cellular organisms → Bacteria	8582

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS063272_LANL_scaffold_10461	SRS063272_LANL_scaffold_10461__gene_11794	F051213	MKASKFLWAVVIALTFVLTSCDPFSKNEPIVEGDVDKYFDSNAQHKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDFRISYDWVTFTIKENKSVIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVTQRAK
SRS063272_LANL_scaffold_10461	SRS063272_LANL_scaffold_10461__gene_11795	F051213	MKVSKFLWAVVMALTFVLTSCDPFSQNEPTIEGDHYKYFDSSVQRQSFRVVNGSGKQYNHKVDWHIIGIREENSDTYLTKKVDTLSNGDFRISYDWVTFTVKKNKSVIDVEVQKNETGKDRSVFFATRNSYKQAYLPNMIVTQRAK
SRS063272_LANL_scaffold_8240	SRS063272_LANL_scaffold_8240__gene_7962	F077404	MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKRELKRNAVYLPPALEEYTDTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFVQSYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFHFNRIQ