7000000639: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 7000000639
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053215 | Ga0027941
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22142554
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F063778	Metagenome	129	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1200322	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	648
C1207512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	890
C1212989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1819
SRS015745_WUGC_scaffold_2705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9873

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1200322	C1200322__gene_38089	F049707	TTQVGNYLPRSSVVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDDTGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS
C1207512	C1207512__gene_42581	F101358	KECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSTRRLVGSVAAKASGEVDNSSLVRRALGRVR
C1212989	C1212989__gene_46755	F063778	MPETISEGAKQQLLQQLQDALGLVADADTSANDVAAITHSAADGHQLTEVMLQEMTAARGCLKLCADQIEYAISNIEAIPLDPPPED
SRS015745_WUGC_scaffold_2705	SRS015745_WUGC_scaffold_2705__gene_1723	F043991	MGKKKPSAVDGFDLNGNVVEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS015745_WUGC_scaffold_2705	SRS015745_WUGC_scaffold_2705__gene_1727	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSTEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK