7000000633: Human stool microbial communities from NIH, USA - visit 2, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000633
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053209 | Ga0030484
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187617216
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F082887	Metagenome / Metatranscriptome	113	Y
F097172	Metagenome / Metatranscriptome	104	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2455869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2145
C2478376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	4658
SRS015065_WUGC_scaffold_29774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	624

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2455869	C2455869__gene_260437	F082887	AKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISNREKK
C2478376	C2478376__gene_272662	F097172	MKKNVFKKMMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGYDKNGYPVNGFSKTSFYKDLNSLPSIKVGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFSVDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDINIEYRK
SRS015065_WUGC_scaffold_29774	SRS015065_WUGC_scaffold_29774__gene_74045	F032286	QIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI
SRS015065_WUGC_scaffold_39762	SRS015065_WUGC_scaffold_39762__gene_104436	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ