7000000624: Human stool microbial communities from NIH, USA - visit 2, subject 159571453

Overview

Basic Information

• IMG/M Taxon OID: 7000000624
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053199 | Ga0030563
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159571453
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201626213
• Sequencing Scaffolds: 13
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria	4
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F042910	Metagenome	157	N
F047755	Metagenome	149	Y
F058555	Metagenome	135	N
F059982	Metagenome	133	N
F064725	Metagenome	128	N
F068856	Metagenome	124	N
F073573	Metagenome	120	N
F075480	Metagenome	119	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F087213	Metagenome	110	N
F087336	Metagenome	110	N
F093883	Metagenome	106	N
F101191	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3086825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	672
C3110754	All Organisms → cellular organisms → Bacteria	768
C3148798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1011
C3194670	All Organisms → cellular organisms → Bacteria	1691
C3206497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2084
C3210574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2265
C3215078	All Organisms → cellular organisms → Bacteria	2523
C3223416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3237
SRS024435_LANL_scaffold_20298	All Organisms → cellular organisms → Bacteria	60235
SRS024435_LANL_scaffold_23226	Not Available	35169
SRS024435_LANL_scaffold_28092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis	1913
SRS024435_LANL_scaffold_31519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1552
SRS024435_LANL_scaffold_8137	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	58624

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3086825	C3086825__gene_213343	F087213	TAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDAHLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
C3110754	C3110754__gene_225586	F087336	RGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPPTSKQKRAPQEVNSQSALSESNQLINP
C3146335	C3146335__gene_244639	F078004	LPPNPITCFIIRILQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
C3148798	C3148798__gene_245958	F101191	MLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEITERVTTLTPKQTRKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
C3194670	C3194670__gene_273477	F047755	DIKDKLRLAICMSQSKWSGLIYNTKENYKKFDSMLKNIDEEYMTTLIDFSKYKLIMFAMAKLMEMETTEQNKVALYLFNYIEK
C3206497	C3206497__gene_281558	F042910	LRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
C3210574	C3210574__gene_284599	F073573	MLRGQRWSHLTKNTPKEVFTMPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERYYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEAR
C3215078	C3215078__gene_287984	F059982	MTMRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVAEDAAATASPEV
C3223416	C3223416__gene_294916	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNMWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
SRS024435_LANL_scaffold_20298	SRS024435_LANL_scaffold_20298__gene_48269	F075481	MKRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITKRKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGVNKKRNDIKDLDNKIDIKSKDVDDKKESKWPTVWIVCGILMILLVLVYILKRIRIL
SRS024435_LANL_scaffold_20298	SRS024435_LANL_scaffold_20298__gene_48273	F042095	MAKTLYKYEALSNKFMWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGHDSYHIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYVNINTCKMTAFPIVDIPDLESLIVSHTRYVNDGIPVDRLSRSKKLIYINLSDIGQRMTEMPEAITSKTEVDHLNMFNILDLRDIESSGIRNIKNMKNLQALDLSSCYLDRYIKEFNDLPKLTSLNITSGPLDMCNYFDINTLPSFEVDKINPNIAYFSFLEDWKNGERRTGWNDDNMSGRGLDHIANFNVSHSNGIRVDKLPDYIYEMRSITRFGMNCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYSSQYPDENQRPSGTEQASEGFVKGQSNGSPATPMEKIYVLKNNYAQIWTIKPE
SRS024435_LANL_scaffold_20298	SRS024435_LANL_scaffold_20298__gene_48287	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSPSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
SRS024435_LANL_scaffold_20298	SRS024435_LANL_scaffold_20298__gene_48294	F058555	MKLVYSQKIKSTMGTKIGILHIMKSNFDKIITERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKSLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKDVLSMCCKTISDLYDEVKKNNGIINTKDRKNVNIGHLRLSYRGTIMHIIIAEDYIRDVFLGVKGAEMSKA
SRS024435_LANL_scaffold_20298	SRS024435_LANL_scaffold_20298__gene_48310	F083452	MSGRVKIKSKDKDKKPKIDVFKIIENRFKNMNELRDMIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
SRS024435_LANL_scaffold_23226	SRS024435_LANL_scaffold_23226__gene_55085	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEEGTKVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGSMDIGDVENPDVKLDMPELIDSNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS024435_LANL_scaffold_23226	SRS024435_LANL_scaffold_23226__gene_55094	F064725	MGLQAVEVFFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFNKYIKLI
SRS024435_LANL_scaffold_28092	SRS024435_LANL_scaffold_28092__gene_67829	F075480	GDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
SRS024435_LANL_scaffold_31519	SRS024435_LANL_scaffold_31519__gene_78032	F068856	LVGMALAEETPDTALGDWYALNTENEAICLTLREDGTFCYDSREGTWCKTTDGEYWLTYNIHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMEMTYTLDKGERLAFCTIDGLTMLPGAALGNFTEGTSYPMTLEDGKLHTTILMQMTEEETLDFDLTFFQTADGSLYATLRLNDVPDNPTTMFLLVPMEKE
SRS024435_LANL_scaffold_7741	SRS024435_LANL_scaffold_7741__gene_19379	F078004	SRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
SRS024435_LANL_scaffold_8137	SRS024435_LANL_scaffold_8137__gene_20442	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVIFDITGHRMDDNKERIDFMFIYFMARLCV
SRS024435_LANL_scaffold_8137	SRS024435_LANL_scaffold_8137__gene_20447	F078006	MEDNILKRAAAELKEAGCRVFAWQDDFYNRSWDKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLATALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNYNKKLFKEI
SRS024435_LANL_scaffold_8137	SRS024435_LANL_scaffold_8137__gene_20448	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPIVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
SRS024435_LANL_scaffold_8137	SRS024435_LANL_scaffold_8137__gene_20463	F078005	MEKSEFVKNLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLGVEANVMAGMDDMDFTCLMCEVYKQKAVKAIMMEKDDDEDN
SRS024435_LANL_scaffold_8137	SRS024435_LANL_scaffold_8137__gene_20491	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSPLAKKLGYEINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFMGKRYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDRRDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYAFNK