7000000619: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525

Overview

Basic Information

• IMG/M Taxon OID: 7000000619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053193 | Ga0028008
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15019573
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1001670	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	768
C1003734	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	936
SRS045978_WUGC_scaffold_8166	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	742

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1001670	C1001670__gene_27947	F051214	RLFFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
C1003734	C1003734__gene_29104	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETNGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHAITNEKGH
C1003734	C1003734__gene_29105	F027205	KGPRGPSLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS045978_WUGC_scaffold_8166	SRS045978_WUGC_scaffold_8166__gene_6558	F099454	MKASKLLWAVVVALTFVFTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGVLDPKSETYLTKKVDTLSNGDLKISYDWVAFIVKENKSVIDVEVQKNETGQDRSVDFVAKDNHKGLDSPSMTIIQRAK