7000000616: Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 159510762

Overview

Basic Information

• IMG/M Taxon OID: 7000000616
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053190 | Ga0031118
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 159510762
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95219924
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043990	Metagenome	155	N
F046433	Metagenome	151	N
F051213	Metagenome	144	N
F058221	Metagenome	135	N
F066860	Metagenome	126	N
F077404	Metagenome	117	N
F080165	Metagenome	115	N
F103430	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2668014	Not Available	634
C2686229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	774
C2686381	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	776
C2686971	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	782
C2710827	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1281
C2726317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3962
SRS064329_LANL_scaffold_1847	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1385
SRS064329_LANL_scaffold_39547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	853
SRS064329_LANL_scaffold_50379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	688
SRS064329_LANL_scaffold_51388	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1567

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2668014	C2668014__gene_139657	F103430	TIKAFIGSNNKTKELEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI
C2686229	C2686229__gene_147622	F077404	MMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRF
C2686381	C2686381__gene_147686	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYIL
C2686971	C2686971__gene_147960	F043990	IKKLGIIFTFGVIILGIVVYADHKIERSWIEAEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPEQFINITNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
C2710827	C2710827__gene_159158	F080165	MKNKKFILGILLSLTACNNKTKTISTLELEKTIIGYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGYSLYIPNHYNIYEKDSLSYTFTRFILK
C2726317	C2726317__gene_168135	F103436	SSKVFLLLIILQVAKMITTSKDGWCCKSDAEILNNLKDWVSSCDVDFKREALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIQILKVRKHEFFNE
SRS064329_LANL_scaffold_1847	SRS064329_LANL_scaffold_1847__gene_1997	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKKEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQIEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLDKG
SRS064329_LANL_scaffold_39547	SRS064329_LANL_scaffold_39547__gene_47596	F051213	MALTFVLTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNQKVDWHIIGITAPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE
SRS064329_LANL_scaffold_50379	SRS064329_LANL_scaffold_50379__gene_66080	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
SRS064329_LANL_scaffold_51388	SRS064329_LANL_scaffold_51388__gene_70103	F058221	MKNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEVGSAKLLSNALLKKVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI