7000000615: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695

Overview

Basic Information

• IMG/M Taxon OID: 7000000615
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053187 | Ga0031060
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67901405
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
Not Available	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F067847	Metagenome	125	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F095631	Metagenome	105	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1893783	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	636
C1911743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	850
C1917152	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	961
C1932226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1663
C1937574	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2524
C1937600	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2530
SRS019591_WUGC_scaffold_1694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2968
SRS019591_WUGC_scaffold_22068	All Organisms → Viruses → Predicted Viral	4610
SRS019591_WUGC_scaffold_22436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3206
SRS019591_WUGC_scaffold_24902	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	40765
SRS019591_WUGC_scaffold_27767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	768
SRS019591_WUGC_scaffold_29026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1097
SRS019591_WUGC_scaffold_32775	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	7652
SRS019591_WUGC_scaffold_3342	Not Available	527
SRS019591_WUGC_scaffold_35484	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3207
SRS019591_WUGC_scaffold_37044	All Organisms → Viruses	18072
SRS019591_WUGC_scaffold_40726	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	910
SRS019591_WUGC_scaffold_41860	All Organisms → cellular organisms → Bacteria	2101
SRS019591_WUGC_scaffold_42888	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	43553
SRS019591_WUGC_scaffold_43280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1302
SRS019591_WUGC_scaffold_7299	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	710

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1893783	C1893783__gene_100061	F089056	TMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNIFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ
C1911743	C1911743__gene_106217	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKITKQVQQDPKYKELDDKLKETELNNL
C1917152	C1917152__gene_108137	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
C1932226	C1932226__gene_113714	F097525	MQQKKIMFKIQNAYQKIVFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISADKEKPAEIGFIEPELSFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKRE
C1937574	C1937574__gene_115937	F061926	AKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSLYKIFVSERIILLWQSRAPPVLS
C1937600	C1937600__gene_115955	F061926	AKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS019591_WUGC_scaffold_1694	SRS019591_WUGC_scaffold_1694__gene_1474	F101358	MTEKHSASLPPRQPEHLLTQPITTDGTPKERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDAEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNLDFTNAYLQRAYGVMMEDGRLQPVADTTHTASQSSATEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVKQ
SRS019591_WUGC_scaffold_22068	SRS019591_WUGC_scaffold_22068__gene_25746	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVDVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTVYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
SRS019591_WUGC_scaffold_22436	SRS019591_WUGC_scaffold_22436__gene_26256	F063778	MPETISEGAQQKLLQQLQDALGLVAEADTSAHDVAAITHSATDGHQLTELMLQELTAAREYLKSCADQIEHAISNVKAIPLDPPPDD
SRS019591_WUGC_scaffold_24902	SRS019591_WUGC_scaffold_24902__gene_29460	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRTIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR
SRS019591_WUGC_scaffold_24902	SRS019591_WUGC_scaffold_24902__gene_29489	F101360	VSKENALRKAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGGPRISVRISGAQEERIRDLISTGDISLIEIEGGDA
SRS019591_WUGC_scaffold_27767	SRS019591_WUGC_scaffold_27767__gene_33207	F081456	YPDLGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE
SRS019591_WUGC_scaffold_29026	SRS019591_WUGC_scaffold_29026__gene_34867	F063778	LMPETISEEAKQELLRQLQDALGLVKDADTSAHDVAAITHSAADGHQLTEVMLQQVTAIEAYLKNCQVSINDAIGNIEAIPLDLPPED
SRS019591_WUGC_scaffold_32775	SRS019591_WUGC_scaffold_32775__gene_40002	F054111	MVFKNLEKESMNKPLDNITHETFLKLIEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILSLENQ
SRS019591_WUGC_scaffold_3342	SRS019591_WUGC_scaffold_3342__gene_3431	F054109	MAGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDISLSSYINKAVLEKVERDEKSEN
SRS019591_WUGC_scaffold_35484	SRS019591_WUGC_scaffold_35484__gene_43772	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRRGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK
SRS019591_WUGC_scaffold_37044	SRS019591_WUGC_scaffold_37044__gene_46162	F105377	VRDFDNLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLIRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRGI
SRS019591_WUGC_scaffold_40726	SRS019591_WUGC_scaffold_40726__gene_52780	F059076	MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKIGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQHTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTEINFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS019591_WUGC_scaffold_41860	SRS019591_WUGC_scaffold_41860__gene_55121	F061927	MKNPIFILSVILILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENKP
SRS019591_WUGC_scaffold_42888	SRS019591_WUGC_scaffold_42888__gene_57630	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFNYRFELNTDNKIDKNVRLKVNDVHEMKATSDKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA
SRS019591_WUGC_scaffold_43280	SRS019591_WUGC_scaffold_43280__gene_58634	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS019591_WUGC_scaffold_7299	SRS019591_WUGC_scaffold_7299__gene_8188	F089056	TMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ