7000000611: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000611
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053183 | Ga0028020
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68874072
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F089056	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2681565	Not Available	1708
C2682363	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1776
C2685733	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2169
C2687613	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2506
C2687925	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2572
C2690755	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	3474
C2691173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3700
C2692299	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4487
C2692501	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4688
C2692585	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4788
C2693365	All Organisms → cellular organisms → Bacteria	5971
C2694303	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	11550
SRS043422_LANL_scaffold_26381	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2681565	C2681565__gene_98831	F054109	MVGRPKTERGMKVHTAFKIYPDDKARAQAMADKLDMSLSSYINKAVLEKVARDEKSED
C2682363	C2682363__gene_99570	F072446	MKKLVFLLFGLCLYCFTACDNDHEPAKPVRPFNGDTLAQIAWNFRFIVEKHYHSIPGRVPEGTTYRVPVIPRSVEDRTKKEYNDMEFDKVAHLVFRATVHGDTINRHKKELETVARQLNALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYDSGIVTLNCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMVFSSIRFAITLFNGEVLSFQHKLPSKSVLENYKQYGFEREATYFTTLWPLPEKEIER
C2685733	C2685733__gene_102950	F061927	MKNPIFILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECTMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGE
C2687613	C2687613__gene_105156	F059076	FILFFYCIFASLNYTLMTNRILLLGLLLGGASINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNVGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTKTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE
C2687925	C2687925__gene_105553	F068942	MIRKILSLPTLALCFMLGSAFFAGCNEEYIKDTKVRWSNVKNPQYGDPINITLKAEGETFTTVGDYPGISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNERERTATLKLVAPPNRTQQPKQFDFSIGVSPLGTYLFKVRQPALPAKAQ
C2690755	C2690755__gene_109668	F054111	MNKSLDNITHETFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
C2691173	C2691173__gene_110395	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGKELGKTNYQYSNGKLSSVIDEAVISDSGIQYKRVVTREYHYNGSEVSVNENVKYHSESYAYNLKDENSTHTYVLNGENIIKIHHDISKNVPNGHFYLNPNNMVVIDEEVIYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTIITMVYEYNK
C2692299	C2692299__gene_112705	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C2692501	C2692501__gene_113176	F089056	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C2692585	C2692585__gene_113333	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGELGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSCFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
C2693365	C2693365__gene_115362	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGTKKISLEDITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2694303	C2694303__gene_118823	F057446	MNSISFGKTSITSYPEYFEITDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTENKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQEEAEQIIKFLMNNR
SRS043422_LANL_scaffold_26381	SRS043422_LANL_scaffold_26381__gene_28258	F051213	PTIEGDHYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSIIDVEVQKNETGKDRSVFFVTRNSYKQAYLPNMIVTQRAK