7000000608: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063

Overview

Basic Information

• IMG/M Taxon OID: 7000000608
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053180 | Ga0031316
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67768609
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F042387	Metagenome	158	N
F046432	Metagenome	151	Y
F051213	Metagenome	144	N
F054109	Metagenome	140	N
F078842	Metagenome	116	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2426658	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	514
C2440074	Not Available	578
C2477232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1034
C2487318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1565
C2487624	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1595
SRS024375_LANL_scaffold_17850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	20067
SRS024375_LANL_scaffold_19293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1075
SRS024375_LANL_scaffold_44058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3431

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2426658	C2426658__gene_97120	F099454	KASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK
C2440074	C2440074__gene_102481	F054109	MSGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDVSLSSYINKAVLEKVKRDEKSEN
C2477232	C2477232__gene_118601	F046432	MWEMTENELSEVISKYQMPEGRYSVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEIKS
C2487318	C2487318__gene_123640	F033081	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
C2487624	C2487624__gene_123796	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVISDSGIQYKKVVIREYRYNGSEVLVNENIKYHSESYAYNLKDENFTHTYVLNGENITKIHHQISKNVSGGHFYLNPNNMVVIDEEVIYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSTNLYGSGADSSEYKFQYEYKNNFPIK
SRS024375_LANL_scaffold_17850	SRS024375_LANL_scaffold_17850__gene_20262	F103431	MINLDGLIVGMLFFIQLFLQSIAWGVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESQKEGFHVCIPEG
SRS024375_LANL_scaffold_19293	SRS024375_LANL_scaffold_19293__gene_21839	F051213	MKASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS024375_LANL_scaffold_44058	SRS024375_LANL_scaffold_44058__gene_54321	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLNRLQGNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKIVIPEDAILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIAMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYETNS