7000000600: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 7000000600
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053172 | Ga0031256
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111446287
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F051212	Metagenome	144	N
F058221	Metagenome	135	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F071327	Metagenome	122	N
F080164	Metagenome	115	N
F080165	Metagenome	115	N
F081510	Metagenome	114	N
F089056	Metagenome	109	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2542171	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	511
C2557614	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	565
C2619380	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1187
C2642041	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3448
SRS016002_WUGC_scaffold_36606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1433
SRS016002_WUGC_scaffold_43754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2264
SRS016002_WUGC_scaffold_50494	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1176
SRS016002_WUGC_scaffold_59691	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1313
SRS016002_WUGC_scaffold_60593	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2059
SRS016002_WUGC_scaffold_61344	Not Available	1342
SRS016002_WUGC_scaffold_61880	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2291
SRS016002_WUGC_scaffold_63306	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	41122

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2542171	C2542171__gene_143316	F058221	MGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITSGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLD
C2557614	C2557614__gene_148841	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERTDLEDLTRNLKDLYECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQT
C2619380	C2619380__gene_172861	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2642041	C2642041__gene_183922	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKRNQILTLKVLIIALAAALLFEYAYPWRIIFG
SRS016002_WUGC_scaffold_36606	SRS016002_WUGC_scaffold_36606__gene_48510	F043990	MIKKLGIIFTFGVIILGIVVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRDFGILIVDTTRKEIYIYNQIL
SRS016002_WUGC_scaffold_43754	SRS016002_WUGC_scaffold_43754__gene_58754	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFET
SRS016002_WUGC_scaffold_50494	SRS016002_WUGC_scaffold_50494__gene_68478	F089056	MKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKKYLGTPTRRFKDKEEIVFMYYINSCCDNGLLLEECDVSFISITFTNKNKILFGKGIQ
SRS016002_WUGC_scaffold_59691	SRS016002_WUGC_scaffold_59691__gene_84380	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQIGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK
SRS016002_WUGC_scaffold_60593	SRS016002_WUGC_scaffold_60593__gene_86385	F041827	SALALGCLLLSCNRDNETNETPAPPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHAYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRAFTYKLNWYNNIELVQDLRFIDNVKTRNYPNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYIEEQ
SRS016002_WUGC_scaffold_61344	SRS016002_WUGC_scaffold_61344__gene_88375	F080164	WRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKLLHYKGQAGQLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS016002_WUGC_scaffold_61880	SRS016002_WUGC_scaffold_61880__gene_89908	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQSLQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTRYILR
SRS016002_WUGC_scaffold_63306	SRS016002_WUGC_scaffold_63306__gene_97540	F081510	MKFNLNAVKATAKTTWVTTKILGKKYAPVILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDDKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN