7000000595: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 7000000595
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053167 | Ga0029714
• Sample Name: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79617890
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F085820	Metagenome	111	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1983185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1211
C1985729	Not Available	1299
SRS019026_WUGC_scaffold_15266	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1529
SRS019026_WUGC_scaffold_15899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3977
SRS019026_WUGC_scaffold_21725	Not Available	3879

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1983185	C1983185__gene_123352	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRRKDEKFICLTNIWPDGSSHEESYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKRCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK
C1985729	C1985729__gene_125155	F085820	MYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS019026_WUGC_scaffold_15266	SRS019026_WUGC_scaffold_15266__gene_12911	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKIRCKTTEYEAINDFVQFIEMIKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRCHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFSGDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERIAGFEVDNDPEDHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLERE
SRS019026_WUGC_scaffold_15899	SRS019026_WUGC_scaffold_15899__gene_13643	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK
SRS019026_WUGC_scaffold_21725	SRS019026_WUGC_scaffold_21725__gene_21511	F105378	KEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSIHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVN