| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000593 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053164 | Ga0031229 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158499257 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 75484544 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 25 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 3 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8 | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030786 | Metagenome | 184 | N |
| F033081 | Metagenome | 178 | Y |
| F040149 | Metagenome | 162 | N |
| F043235 | Metagenome | 156 | N |
| F043991 | Metagenome | 155 | N |
| F045567 | Metagenome | 152 | N |
| F047508 | Metagenome | 149 | N |
| F058221 | Metagenome | 135 | N |
| F061926 | Metagenome | 131 | N |
| F063777 | Metagenome | 129 | N |
| F064819 | Metagenome | 128 | N |
| F072445 | Metagenome / Metatranscriptome | 121 | Y |
| F080164 | Metagenome | 115 | N |
| F080166 | Metagenome | 115 | N |
| F081455 | Metagenome | 114 | N |
| F081456 | Metagenome | 114 | N |
| F084362 | Metagenome | 112 | N |
| F089055 | Metagenome | 109 | Y |
| F089057 | Metagenome | 109 | N |
| F092229 | Metagenome | 107 | N |
| F092230 | Metagenome | 107 | N |
| F094007 | Metagenome | 106 | N |
| F103435 | Metagenome | 101 | N |
| F105379 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C5101223 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 556 | Open in IMG/M |
| C5106221 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 580 | Open in IMG/M |
| C5114941 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 633 | Open in IMG/M |
| C5115771 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 639 | Open in IMG/M |
| C5127674 | Not Available | 741 | Open in IMG/M |
| C5136908 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 860 | Open in IMG/M |
| C5140277 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 925 | Open in IMG/M |
| C5146643 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8 | 1087 | Open in IMG/M |
| C5146951 | Not Available | 1097 | Open in IMG/M |
| C5156819 | All Organisms → Viruses → Predicted Viral | 1730 | Open in IMG/M |
| C5164210 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena | 8956 | Open in IMG/M |
| SRS011140_Baylor_scaffold_43878 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1096 | Open in IMG/M |
| SRS011140_Baylor_scaffold_47693 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 1484 | Open in IMG/M |
| SRS011140_Baylor_scaffold_47908 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1086 | Open in IMG/M |
| SRS011140_Baylor_scaffold_53761 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 600 | Open in IMG/M |
| SRS011140_Baylor_scaffold_53814 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 592 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54187 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses | 31160 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54428 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 1601 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54463 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1769 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54489 | All Organisms → Viruses → Predicted Viral | 2292 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54682 | All Organisms → cellular organisms → Bacteria | 4548 | Open in IMG/M |
| SRS011140_Baylor_scaffold_54763 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2792 | Open in IMG/M |
| SRS011140_Baylor_scaffold_9813 | All Organisms → cellular organisms → Bacteria | 682 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C5101223 | C5101223__gene_112953 | F043235 | GHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQISGAAILVKEVKDGMYMSHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH |
| C5106221 | C5106221__gene_115301 | F058221 | LKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI |
| C5106995 | C5106995__gene_115667 | F103435 | VIRMKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIDRFYNGSEVFIVVGNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVNSIRDDIDFSPQGAQLAYLQRAEYLKLEAKR |
| C5114941 | C5114941__gene_119366 | F081456 | LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE |
| C5115771 | C5115771__gene_119755 | F094007 | MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGSYDRARRIERNRSSDISEVGRLAINACEACPLKLDCELYGKLGEAVLSDVLDYKKVRTATSLTKAGKKRPGWNKGCIDNDA |
| C5127674 | C5127674__gene_125719 | F047508 | WVVKRSKLCALMEHIYDLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
| C5136908 | C5136908__gene_130637 | F043991 | VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPD |
| C5140277 | C5140277__gene_132440 | F092230 | MVDKLKTHLLKVILPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV |
| C5146643 | C5146643__gene_136183 | F105379 | MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNIGKITQLEPSKDNPEIAIHKPVVSVFNWDTEYIKACMNSLREYQIDDNIIARTDEFHNTNDYNELMAGSASTGASRINVGGYMIDIPKSAMPTLKSDHVVATVYN |
| C5146951 | C5146951__gene_136348 | F080164 | MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPFLYKGQTGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS |
| C5156819 | C5156819__gene_142881 | F080166 | VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR |
| C5156819 | C5156819__gene_142882 | F081455 | METTINKKDLGFINNLIRDCDDYININHRERMAEKLLRVAIEDNDIPPAEEIGMQNIEIVDSATDAIQQPLVNTDSSIAVNFSQMINKPEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTKTVVRAVRLLNYKMADQNAAMKFGQFVSEFNPECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK |
| C5164210 | C5164210__gene_149874 | F061926 | FGNLDYICVRYQIMMIKTAKHIKTFLASVLLLIFVMDVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS |
| SRS011140_Baylor_scaffold_43878 | SRS011140_Baylor_scaffold_43878__gene_39432 | F033081 | MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVLAIDIAKLL |
| SRS011140_Baylor_scaffold_47693 | SRS011140_Baylor_scaffold_47693__gene_43324 | F058221 | MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKVGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI |
| SRS011140_Baylor_scaffold_47908 | SRS011140_Baylor_scaffold_47908__gene_43561 | F089055 | EAREKLAAIFSDAEQRGDNSKVSPELGKTAIDIEDTSKMDSADNGAVDFCDQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK |
| SRS011140_Baylor_scaffold_53761 | SRS011140_Baylor_scaffold_53761__gene_52377 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEI |
| SRS011140_Baylor_scaffold_53814 | SRS011140_Baylor_scaffold_53814__gene_52494 | F063777 | LSPENNSFWMKLLFCLCIPFLFIFVILLLIGWEIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCVKSNEYLDDDYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFDKNTGKITVLTDIKNFFWLDFDSETKIINGYNNKEQIEIAISE |
| SRS011140_Baylor_scaffold_54187 | SRS011140_Baylor_scaffold_54187__gene_53361 | F072445 | MATVTDLVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNNVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTLSAKFEHYSLEFKNL |
| SRS011140_Baylor_scaffold_54428 | SRS011140_Baylor_scaffold_54428__gene_54047 | F092229 | MMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG |
| SRS011140_Baylor_scaffold_54463 | SRS011140_Baylor_scaffold_54463__gene_54129 | F045567 | MITEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSSERGCVVERVVR |
| SRS011140_Baylor_scaffold_54489 | SRS011140_Baylor_scaffold_54489__gene_54191 | F089057 | MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSRNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM |
| SRS011140_Baylor_scaffold_54682 | SRS011140_Baylor_scaffold_54682__gene_54859 | F084362 | MSLMNCTFTVRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAVRLQDSEKQAEAAAEQKGFW |
| SRS011140_Baylor_scaffold_54763 | SRS011140_Baylor_scaffold_54763__gene_55182 | F030786 | QLLLKNGSAAKGGSATGTKKISLADITGGDDSEIGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC |
| SRS011140_Baylor_scaffold_9813 | SRS011140_Baylor_scaffold_9813__gene_8264 | F040149 | VADEGAEELRWKVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP |
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