NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000593

7000000593: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158499257



Overview

Basic Information
IMG/M Taxon OID7000000593 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053164 | Ga0031229
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 158499257
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size75484544
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ81
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F033081Metagenome178Y
F040149Metagenome162N
F043235Metagenome156N
F043991Metagenome155N
F045567Metagenome152N
F047508Metagenome149N
F058221Metagenome135N
F061926Metagenome131N
F063777Metagenome129N
F064819Metagenome128N
F072445Metagenome / Metatranscriptome121Y
F080164Metagenome115N
F080166Metagenome115N
F081455Metagenome114N
F081456Metagenome114N
F084362Metagenome112N
F089055Metagenome109Y
F089057Metagenome109N
F092229Metagenome107N
F092230Metagenome107N
F094007Metagenome106N
F103435Metagenome101N
F105379Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C5101223All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales556Open in IMG/M
C5106221All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales580Open in IMG/M
C5114941All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes633Open in IMG/M
C5115771All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria639Open in IMG/M
C5127674Not Available741Open in IMG/M
C5136908All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes860Open in IMG/M
C5140277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae925Open in IMG/M
C5146643All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ81087Open in IMG/M
C5146951Not Available1097Open in IMG/M
C5156819All Organisms → Viruses → Predicted Viral1730Open in IMG/M
C5164210All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena8956Open in IMG/M
SRS011140_Baylor_scaffold_43878All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1096Open in IMG/M
SRS011140_Baylor_scaffold_47693All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101484Open in IMG/M
SRS011140_Baylor_scaffold_47908All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1086Open in IMG/M
SRS011140_Baylor_scaffold_53761All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium600Open in IMG/M
SRS011140_Baylor_scaffold_53814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales592Open in IMG/M
SRS011140_Baylor_scaffold_54187All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses31160Open in IMG/M
SRS011140_Baylor_scaffold_54428All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161601Open in IMG/M
SRS011140_Baylor_scaffold_54463All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1769Open in IMG/M
SRS011140_Baylor_scaffold_54489All Organisms → Viruses → Predicted Viral2292Open in IMG/M
SRS011140_Baylor_scaffold_54682All Organisms → cellular organisms → Bacteria4548Open in IMG/M
SRS011140_Baylor_scaffold_54763All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2792Open in IMG/M
SRS011140_Baylor_scaffold_9813All Organisms → cellular organisms → Bacteria682Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C5101223C5101223__gene_112953F043235GHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQISGAAILVKEVKDGMYMSHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C5106221C5106221__gene_115301F058221LKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
C5106995C5106995__gene_115667F103435VIRMKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIDRFYNGSEVFIVVGNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVNSIRDDIDFSPQGAQLAYLQRAEYLKLEAKR
C5114941C5114941__gene_119366F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE
C5115771C5115771__gene_119755F094007MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGSYDRARRIERNRSSDISEVGRLAINACEACPLKLDCELYGKLGEAVLSDVLDYKKVRTATSLTKAGKKRPGWNKGCIDNDA
C5127674C5127674__gene_125719F047508WVVKRSKLCALMEHIYDLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C5136908C5136908__gene_130637F043991VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPD
C5140277C5140277__gene_132440F092230MVDKLKTHLLKVILPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C5146643C5146643__gene_136183F105379MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNIGKITQLEPSKDNPEIAIHKPVVSVFNWDTEYIKACMNSLREYQIDDNIIARTDEFHNTNDYNELMAGSASTGASRINVGGYMIDIPKSAMPTLKSDHVVATVYN
C5146951C5146951__gene_136348F080164MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPFLYKGQTGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
C5156819C5156819__gene_142881F080166VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR
C5156819C5156819__gene_142882F081455METTINKKDLGFINNLIRDCDDYININHRERMAEKLLRVAIEDNDIPPAEEIGMQNIEIVDSATDAIQQPLVNTDSSIAVNFSQMINKPEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTKTVVRAVRLLNYKMADQNAAMKFGQFVSEFNPECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
C5164210C5164210__gene_149874F061926FGNLDYICVRYQIMMIKTAKHIKTFLASVLLLIFVMDVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS011140_Baylor_scaffold_43878SRS011140_Baylor_scaffold_43878__gene_39432F033081MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVLAIDIAKLL
SRS011140_Baylor_scaffold_47693SRS011140_Baylor_scaffold_47693__gene_43324F058221MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKVGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
SRS011140_Baylor_scaffold_47908SRS011140_Baylor_scaffold_47908__gene_43561F089055EAREKLAAIFSDAEQRGDNSKVSPELGKTAIDIEDTSKMDSADNGAVDFCDQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
SRS011140_Baylor_scaffold_53761SRS011140_Baylor_scaffold_53761__gene_52377F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEI
SRS011140_Baylor_scaffold_53814SRS011140_Baylor_scaffold_53814__gene_52494F063777LSPENNSFWMKLLFCLCIPFLFIFVILLLIGWEIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCVKSNEYLDDDYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFDKNTGKITVLTDIKNFFWLDFDSETKIINGYNNKEQIEIAISE
SRS011140_Baylor_scaffold_54187SRS011140_Baylor_scaffold_54187__gene_53361F072445MATVTDLVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNNVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTLSAKFEHYSLEFKNL
SRS011140_Baylor_scaffold_54428SRS011140_Baylor_scaffold_54428__gene_54047F092229MMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTRSNPSGYVLNHKLELVKG
SRS011140_Baylor_scaffold_54463SRS011140_Baylor_scaffold_54463__gene_54129F045567MITEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSSERGCVVERVVR
SRS011140_Baylor_scaffold_54489SRS011140_Baylor_scaffold_54489__gene_54191F089057MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSRNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM
SRS011140_Baylor_scaffold_54682SRS011140_Baylor_scaffold_54682__gene_54859F084362MSLMNCTFTVRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAVRLQDSEKQAEAAAEQKGFW
SRS011140_Baylor_scaffold_54763SRS011140_Baylor_scaffold_54763__gene_55182F030786QLLLKNGSAAKGGSATGTKKISLADITGGDDSEIGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS011140_Baylor_scaffold_9813SRS011140_Baylor_scaffold_9813__gene_8264F040149VADEGAEELRWKVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP

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