7000000592: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339

Overview

Basic Information

• IMG/M Taxon OID: 7000000592
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053163 | Ga0031297
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63441503
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2631940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	627
C2658687	Not Available	1092
C2671275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2353
C2673167	Not Available	3239
SRS020334_Baylor_scaffold_1163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1006
SRS020334_Baylor_scaffold_3377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	792
SRS020334_Baylor_scaffold_43366	Not Available	3466
SRS020334_Baylor_scaffold_43754	Not Available	2187

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2631940	C2631940__gene_92611	F051211	SDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C2658687	C2658687__gene_104295	F032313	MYRFLILLFALTLMACDNDTPQEKPREQKKHEVPVSKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFYSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGSGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEA
C2671275	C2671275__gene_111511	F054109	TMAGRPKTKRGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSEA
C2673167	C2673167__gene_112887	F054109	TMAGRPKTKRGMKVHTAFKIYPDDKARAQVMADKLELSLSAYINKAVLEKVERDEKSEA
SRS020334_Baylor_scaffold_1163	SRS020334_Baylor_scaffold_1163__gene_1275	F089055	VEKMNSTPKCVTETLELEAAREEIADILSDAEQRDNYKVNPELGKTAFDVANIPDNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK
SRS020334_Baylor_scaffold_3377	SRS020334_Baylor_scaffold_3377__gene_3334	F095633	MGNYENFTEVGRGEGLTEGELRTMGALAMKATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN
SRS020334_Baylor_scaffold_43366	SRS020334_Baylor_scaffold_43366__gene_48768	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS020334_Baylor_scaffold_43754	SRS020334_Baylor_scaffold_43754__gene_49671	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVN